1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgggtctccctctttgatcgtctatatggatggagtatgtgtgttgtgagttgagattgatcgaagcctgtctctgacgacgccgatgccgatgctcggtcgttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACGGGGCCGAGTTCGCCCGGAACAACAACCTGGAGGCCCTGTTCCAGGTGG
species | Zea mays |
transcript | GRMZM2G171390_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGCGCCGCGCCTACTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG GACGTCGCCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACEST: gi|76290758|gb|DV030326.1|DV030326
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACEST: gi|91055542|gb|EB165960.1|EB165960
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACEST: gi|148944802|gb|EC889946.2|EC889946
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACEST: gi|71437528|gb|DR818578.1|DR818578
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACEST: gi|211346611|gb|FL190888.1|FL190888
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACEST: gi|76935489|gb|DV174344.1|DV174344
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACEST: gi|101394335|gb|EB819102.1|EB819102
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACEST: gi|78089256|gb|DV517630.1|DV517630
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACEST: gi|71447084|gb|DR828134.1|DR828134
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACEST: gi|78085618|gb|DV514011.1|DV514011
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
tgatcgaagcctgtctctgacgacgccgatgccgatgctcggtcgttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACGGGGCCGAGTTCGCCCGGAACAACAACCTGGAGGCCCTGTTCCAGGTGG
ctctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtctccctctttgatcgtctatatggatggagtatgtgtgttgtgagttgagattgatcgaagcctgtctctgacgacgccgatgccgatgctcggtcgttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGACGGGGCCGAGTTCGCCCGGAACAACAACCTGGAGGCCCTGTTCCAGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG