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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgaagcgcgggcagatgggaatctcaggcgcgccgccgaaccccgccccgctctgctgcccttatttgttcgatcctcttcggagtgggcgattctagggtttctgacgggcgcgaatgaatgcagGTGGTTCCGTTCAAGGCTTGGGAGGCGGAAGTAGGGAGCGGGAGGATCCGTTCGCGTCCAGCGCCCGTTGACGCGCCCATGTCGGGCCACCTCGATCGCT

Basic information

species Zea mays
transcript GRMZM2G171354_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211039042|gb|FL368657.1|FL368657
EST:     GATTCCCACGCGGCCCTCGAGTCGCCGGCGCCCGCCGACGCCACAGCGAG                         GTGGTTCCGTTCAAGGCTTGGGAGGCGGAAGTAGGGAGCGGGAGGATCCGT
genomic: GATTCCCACGCGGCCCTCGAGTCGCCGGCGCCCGCCGACGCCACAGCGAGgtacgaagcg ... atgaatgcagGTGGTTCCGTTCAAGGCTTGGGAGGCGGAAGTAGGGAGCGGGAGGATCCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcctcttcggagtgggcgattctagggtttctgacgggcgcgaatgaatgcagGTGGTTCCGTTCAAGGCTTGGGAGGCGGAAGTAGGGAGCGGGAGGATCCGTTCGCGTCCAGCGCCCGTTGACGCGCCCATGTCGGGCCACCTCGATCGCT
                              ttctgac  putative branch site (score: 2)
                                            aatgaat  TA-rich tract