1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgattgatatttttttgttttgttttgtttttagtcgtttatagtggtccgaggtgtgtgtgcgtgccggggatagctagctctttgtcgtgatcgatggcgacggcgccgtggccgtggtggtggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAACCGGTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGCGGGACCAGAA
species | Zea mays |
transcript | GRMZM2G171073_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|211276573|gb|FL135681.1|FL135681
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|211274764|gb|FL135676.1|FL135676
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|86466530|gb|DY232900.1|DY232900
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCGTGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|149079811|gb|EE168809.2|EE168809
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|149004453|gb|EE039076.2|EE039076
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|78106463|gb|DV524881.1|DV524881
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|211276575|gb|FL135683.1|FL135683
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|78109193|gb|DV527610.1|DV527610
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|91048119|gb|EB158537.1|EB158537
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|71439765|gb|DR820815.1|DR820815
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|148966765|gb|EE017851.2|EE017851
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|148973264|gb|EE024343.2|EE024343
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|148989685|gb|EE031768.2|EE031768
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|211274761|gb|FL135673.1|FL135673
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|76913956|gb|DV165339.1|DV165339
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|78112595|gb|DV530989.1|DV530989
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|211274767|gb|FL135679.1|FL135679
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|76014993|gb|DT942163.1|DT942163
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|76015015|gb|DT942185.1|DT942185
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|71313169|gb|DR793116.1|DR793116
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|149037291|gb|EE155335.2|EE155335
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|78103895|gb|DV522318.1|DV522318
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|211276576|gb|FL135684.1|FL135684
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|71437227|gb|DR818277.1|DR818277
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|71424567|gb|DR806363.1|DR806363
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|149098029|gb|EE183976.2|EE183976
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|74243979|gb|DT651893.1|DT651893
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|71323979|gb|DR798675.1|DR798675
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|71444559|gb|DR825609.1|DR825609
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|148945429|gb|EC890660.2|EC890660
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|211274763|gb|FL135675.1|FL135675
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAEST: gi|71437740|gb|DR818790.1|DR818790
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
EST: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAG ATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
genomic: GCCGCCCGGCCCGCCCGCCAAGAAAAAGCGTGCCCTCCCCGGCATGCCAGgtgattgata ... ggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattgatatttttttgttttgttttgtttttagtcgtttatagtggtccgaggtgtgtgtgcgtgccggggatagctagctctttgtcgtgatcgatggcgacggcgccgtggccgtggtggtggtggcgcagATCCTGACGCGGAGGTGATCGCGCTGTCGCCCAAGACGCTGCTGGCGACGAACCGGTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGCGGGACCAGAA
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