1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctcctgtatagtaaacaatgaacatcctgtagtatatggtcatacattgtttcttcagtatctgtgctgacagttcttccatatgaccatatctaatagGTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG
species | Zea mays |
transcript | GRMZM2G170699_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGAGCGCAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCTCAG GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTGEST: gi|89248214|gb|DY620000.1|DY620000
genomic: CGGAGCGCAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCTCAGgttagggttc ... tatctaatagGTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG
EST: CGGAGCGCAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCTCAG GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTGEST: gi|88746230|gb|DY530371.1|DY530371
genomic: CGGAGCGCAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCTCAGgttagggttc ... tatctaatagGTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG
EST: GGGAGCGCAACCAAGACGCCACCACCTACGTCGGAAACCTCGACCCTCAG GTTTCAGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTGEST: gi|78124096|gb|DV542480.1|DV542480
genomic: CGGAGCGCAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCTCAGgttagggttc ... tatctaatagGTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG
EST: GGGAGCGCAACCAAGACGCCACCACCTACGTCGGAAACCTCGACCCTCAG GTTTCAGAGGAGCTTCTATGGAAATTATTTGTCCAAGCAGGCCCTGTTGEST: gi|21843149|gb|BQ703730.1|BQ703730
genomic: CGGAGCGCAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCTCAGgttagggttc ... tatctaatagGTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG
EST: CGGAGCGCAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCTCAG GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTGEST: gi|101395862|gb|EB819858.1|EB819858
genomic: CGGAGCGCAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCTCAGgttagggttc ... tatctaatagGTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG
EST: CGGAGCGCAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCTCAG GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG
genomic: CGGAGCGCAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCTCAGgttagggttc ... tatctaatagGTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG
cattgtttcttcagtatctgtgctgacagttcttccatatgaccatatctaatagGTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG
tgctgac putative branch site (score: 36)
atatctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcctgtatagtaaacaatgaacatcctgtagtatatggtcatacattgtttcttcagtatctgtgctgacagttcttccatatgaccatatctaatagGTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
tctcctg
- - - - - - -aaacaat
- - - - - - - - - - - -catcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatatg