1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcttggatttctttctcttccgccactctttcacacagtcccactcatttcctggcccttggtcctcacgcactgggtctgtcatctgtgtgtgggtcgtggtggctggttgcagAACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAGCTGCCATACTCCTACTACTCCCTCCCCTTCTGCAGGCCGGACACCATCG
species | Zea mays |
transcript | GRMZM2G170281_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCCAGCGGGTTCTACCTCCCCGGCGTCGCCCCCGCCGACTTCCGCAAG AACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAGEST: gi|71436651|gb|DR817701.1|DR817701
genomic: CCGCCAGCGGGTTCTACCTCCCCGGCGTCGCCCCCGCCGACTTCCGCAAGgtcttggatt ... ctggttgcagAACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAG
EST: CCGCCAGCGGGTTCTACCTCCCCGGCGTCGCCCCCGCCGACTTCCGCAAG AACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAGEST: gi|37416627|gb|CF645966.1|CF645966
genomic: CCGCCAGCGGGTTCTACCTCCCCGGCGTCGCCCCCGCCGACTTCCGCAAGgtcttggatt ... ctggttgcagAACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAG
EST: CCGCCAGCGGGTTCTACCTCCCCGGCGTCGCCCCCGCCGACTTCCGCAAG AACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAGEST: gi|37420209|gb|CF647793.1|CF647793
genomic: CCGCCAGCGGGTTCTACCTCCCCGGCGTCGCCCCCGCCGACTTCCGCAAGgtcttggatt ... ctggttgcagAACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAG
EST: CCGCCAGCGGGTTCTACCTCCCCGGCGTCGCCCCCGCCGACTTCCGCAAG AACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAGEST: gi|76931661|gb|DV172793.1|DV172793
genomic: CCGCCAGCGGGTTCTACCTCCCCGGCGTCGCCCCCGCCGACTTCCGCAAGgtcttggatt ... ctggttgcagAACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAG
EST: CCGCCAGCGGGTTCTACCTCCCCGGCGTCGCCCCCGCCGACTTCCGCAAG AACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAG
genomic: CCGCCAGCGGGTTCTACCTCCCCGGCGTCGCCCCCGCCGACTTCCGCAAGgtcttggatt ... ctggttgcagAACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAG
ggtcctcacgcactgggtctgtcatctgtgtgtgggtcgtggtggctggttgcagAACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAGCTGCCATACTCCTACTACTCCCTCCCCTTCTGCAGGCCGGACACCATCG
tcctcac putative branch site (score: 9)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttggatttctttctcttccgccactctttcacacagtcccactcatttcctggcccttggtcctcacgcactgggtctgtcatctgtgtgtgggtcgtggtggctggttgcagAACGACTTGCTCGCCGTGAAGGTGAACCAGCTGAGCTCCATCAAGACGCAGCTGCCATACTCCTACTACTCCCTCCCCTTCTGCAGGCCGGACACCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG