1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttctagataatgcaaacctggcttccagctagttctaatcttccacctgtttccgttagctattatttgatcgatcttccaattgcatcctattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATGAACCAGCTGGCTTCTACAATGATCGTGGTGCAACAGTGGACATACCTC
species | Zea mays |
transcript | GRMZM2G169773_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211370168|gb|FL333601.1|FL333601
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211274558|gb|FL349471.1|FL349471
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211265380|gb|FL345555.1|FL345555
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGA-CGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211534447|gb|FL327599.1|FL327599
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|71449251|gb|DR830301.1|DR830301
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211525880|gb|FL340827.1|FL340827
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211278417|gb|FL366616.1|FL366616
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGA-CGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211425017|gb|FL340245.1|FL340245
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGA-CGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211404726|gb|FL347370.1|FL347370
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211465039|gb|FL331927.1|FL331927
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211356729|gb|FL326963.1|FL326963
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGAC-GCAATCCGTTCGAGGAGGATNACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211196276|gb|FL364468.1|FL364468
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211433369|gb|FL360626.1|FL360626
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|78077114|gb|DV505548.1|DV505548
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211015839|gb|FL346618.1|FL346618
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGA-CGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211537608|gb|FL330675.1|FL330675
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211231053|gb|FL343819.1|FL343819
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|78115059|gb|DV533447.1|DV533447
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211211335|gb|FL360036.1|FL360036
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211012583|gb|FL327130.1|FL327130
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211224276|gb|FL315364.1|FL315364
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211067503|gb|FL350735.1|FL350735
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|71429331|gb|DR810381.1|DR810381
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATEST: gi|211146797|gb|FL347631.1|FL347631
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
EST: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCG GGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
genomic: GGAGGTACGACCGCAATCCGTTCGAGGAGGATGACGTCAACCCCTTTGCGgtgagtaatc ... tattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCAT
cctgtttccgttagctattatttgatcgatcttccaattgcatcctattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATGAACCAGCTGGCTTCTACAATGATCGTGGTGCAACAGTGGACATACCTC
atttgat putative branch site (score: 5)
tcctattct putative PPT
tattatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctagataatgcaaacctggcttccagctagttctaatcttccacctgtttccgttagctattatttgatcgatcttccaattgcatcctattctgcagGGAGGAAGTGTACCTCCTGCTTCTAATTCTCGGATGTCAGCACTTCCTCATGAACCAGCTGGCTTCTACAATGATCGTGGTGCAACAGTGGACATACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA