Sequence
atgc intronic sequence ATGC exonic sequence...gtgtcctttgattttaaatcatcattggtctattttactttgtgccaaaaaatgatcgtatcaagtttgtattactgaactctgctgttttctgccgcagTGTTCGGTATGGGAGCCACAAATAGCAGCATGATGGGAATGCAGCAGCAGCAGCAAGGGCTATACGGGAACATGCAGGCAGGTGCACAGAACGTGCCACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G168913_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g31010.1 (Oryza sativa), 3'ss of exon 10
--gtgtcctttgattttaaatcatcattggtctattttactttgtgccaaaaaatgatcgtatcaagtttgtatt-actgaactctgctgttttctgccgcagTGTTCGGTATGGGAGCCACAAA---TAGCAGCATGATGGGAATGCAGCAGCAGCAGCAAGGGCTATACGGGAACATGCAGGCAGGTGCACAGAACGTGCCACA------
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tattcttttcccgtactaataatttgtgaggaagttatcctcaatcctcactatttcaaatgttatatttatatttaccgagc---gattctctccattacagTGTTTGGTATGGGAGGCGCAAATTCTACCAGCATGATGGGAATGCAGCAGCAGCAGCAA----TTTA-----ACATGCAAGCAAATGCTCAGAACCTGCAACAAGGCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78118888|gb|DV537272.1|DV537272EST: GGCTGGTGGGCATCCACATAGGAGCCATCCCCAAATGCTGACTGACCAAA TGTTCGGTATGGGAGCCACAAATAGCAGCATGATGGGAATGCAGCAGCAGC
genomic: GGCTGGTGGGCATCCACATAGGAGCCATCCCCAAATGCTGACTGACCAAAgtatgtatcc ... tctgccgcagTGTTCGGTATGGGAGCCACAAATAGCAGCATGATGGGAATGCAGCAGCAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaaaaatgatcgtatcaagtttgtattactgaactctgctgttttctgccgcagTGTTCGGTATGGGAGCCACAAATAGCAGCATGATGGGAATGCAGCAGCAGCAGCAAGGGCTATACGGGAACATGCAGGCAGGTGCACAGAACGTGCCACA
ctctgctgttttct CT-rich tract
tttgtatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtcctttgattttaaatcatcattggtctattttactttgtgccaaaaaatgatcgtatcaagtttgtattactgaactctgctgttttctgccgcagTGTTCGGTATGGGAGCCACAAATAGCAGCATGATGGGAATGCAGCAGCAGCAGCAAGGGCTATACGGGAACATGCAGGCAGGTGCACAGAACGTGCCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG