1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtagtgagcgagctcctctctgcccctggcctcttcttcgttcattcttgtccactcgaggactgcccgtttgacgactgctcgatcagTGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAAGCGAGGAGATCGATCGAGATGGCTTTCCTCAACATGGAGCAGCAGACCTGGGCCTTCACCTTTGG
species | Zea mays |
transcript | GRMZM2G168365_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTAGCTGAGAGCCTCCAGCTCAG TGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAA-SDAGGAGATCGATCGEST: gi|149100156|gb|EE186212.2|EE186212
genomic: GCTAGCTGAGAGCCTCCAGCTCAGgtagtgagcg ... gctcgatcagTGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAAGCGAGGAGATCGATCG
EST: CAAGAAGGCAGCTAGCTGAGAGCCTCCAGCTCAG TGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAAGCGAGGAGATCGATCGEST: gi|211383054|gb|FL320862.1|FL320862
genomic: CAAGAAGGCAGCTAGCTGAGAGCCTCCAGCTCAGgtagtgagcg ... gctcgatcagTGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAAGCGAGGAGATCGATCG
EST: GCTAGCTGAGAGCCTCCAGCTCAG TGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAAGCGAGGAGATCGATCGEST: gi|211088349|gb|FL312042.1|FL312042
genomic: GCTAGCTGAGAGCCTCCAGCTCAGgtagtgagcg ... gctcgatcagTGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAAGCGAGGAGATCGATCG
EST: GCTAGCTGAGAGCCTCCAGCTCAG TGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAAGCGAGGAGATCGATCGEST: gi|78088794|gb|DV517187.1|DV517187
genomic: GCTAGCTGAGAGCCTCCAGCTCAGgtagtgagcg ... gctcgatcagTGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAAGCGAGGAGATCGATCG
EST: CTAGCTGAGAGCCTCCAGCTCAG TGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAAGCGAGGAGATCGATCG
genomic: CTAGCTGAGAGCCTCCAGCTCAGgtagtgagcg ... gctcgatcagTGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAAGCGAGGAGATCGATCG
tcttcgttcattcttgtccactcgaggactgcccgtttgacgactgctcgatcagTGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAAGCGAGGAGATCGATCGAGATGGCTTTCCTCAACATGGAGCAGCAGACCTGGGCCTTCACCTTTGG
gtttgac putative branch site (score: 86)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgagcgagctcctctctgcccctggcctcttcttcgttcattcttgtccactcgaggactgcccgtttgacgactgctcgatcagTGTGCTAGCTAGCTAGAGCAAGAGAAGGGCTGTAAGCGAGGAGATCGATCGAGATGGCTTTCCTCAACATGGAGCAGCAGACCTGGGCCTTCACCTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG