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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatccctcgtcctttgagtccgatggatctggatctcatccctactcccctgcccgacagCAGCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCA

Basic information

species Zea mays
transcript GRMZM2G168257_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168257_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g01210.3 (Oryza sativa), 3'ss of exon 1
---gtatgtatccctcgtccttt---gagtccgatggatctggatctcatccctactcccctgcccgacagCAGCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCA---
    | |  |||| || || |||      ||  |    ||   ||||||||    || | |  | |||   |||||||| ||| ||||||| ||||||||||| ||||||||||| ||   ||||||||| ||||||||||||||||||||||||||||||||||  ||||   
gcactctccatccatcctcttttcccctatcttacttgtcatcatctcatctgatctgctcctctcgat--cagCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCG

upper sequence: GRMZM2G168257_T03 (Zea mays), 3'ss of exon 1
lower sequence: EFJ11620 (Selaginella moellendorffii), 3'ss of exon 1
---gtatgtatccctcgtcctttgagtccgatggatctggatctca--tccctactcccctgcccgacagCAGCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCA---
      || | | |  |  ||    |||   |       |||||||  |   |  ||   | ||   |||| |||||    |||    ||  |||| ||||| ||    || |||||||||||||||||||| ||  ||||||| ||||| || ||||||| ||| |||    
gtgaattgcagctccagatctgcttgtc---tttccacagatctcaagtggttgttcgatttccttccagCTGCTCGTTCACCG---TTGCCGCGAATGCGGCCAACCGCTACCCGAGAGCTACGAGCCGCCAGCGAACGAGCCGTGGACGACAGGGATCTGCGGCTGCGCCG

upper sequence: GRMZM2G168257_T03 (Zea mays), 3'ss of exon 1
lower sequence: EFJ09771 (Selaginella moellendorffii), 3'ss of exon 1
---gtatgtatccctcgtcctttgagtccgatggatctggatctca--tccctactcccctgcccgacagCAGCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCA---
      || | | |  |  ||    |||   |       |||||||  |   |  ||   | ||   |||| |||||    |||    ||  |||| ||||| ||    || |||||||||||||||||||| ||  ||||||| ||||| || ||||||| ||| |||    
gtgaattgcagctccagatctgcttgtc---tttccacagatctcaagtggttgttcgatttccttccagCTGCTCGTTCACCG---TTGCCGCGAATGCGGCCAACCGCTACCCGAGAGCTACGAGCCGCCAGCGAACGAGCCGTGGACGACGGGGATCTGCGGCTGCGCCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211048968|gb|FL422521.1|FL422521
EST:     CAGCCAGTTCACGTCCCGCAGGTCTCGCTCTCTTTCTTCATTAGGGTAGG                         CAGCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGC
genomic: CAGCCAGTTCACGTCCCGCAGGTCTCGCTCTCTTTCTTCATTAGGGTAGGgtatgtatcc ... tgcccgacagCAGCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgtcctttgagtccgatggatctggatctcatccctactcccctgcccgacagCAGCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCA
                            tctcatccctactccc  CT-rich tract