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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctcgctctctttcttcattagggtagggtatgtatccctcgtcctttgagtccgatggatctggatctcatccctactcccctgcccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCG

Basic information

species Zea mays
transcript GRMZM2G168257_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168257_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g01210.3 (Oryza sativa), 3'ss of exon 1
gtctcgctctctttcttcattagggtagggtatgtatccctcgtcctttgagtccgatggatctggatctcatccctactcccctgcccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCG
                      |        ||  ||||    | |    | ||  |    ||   ||||||||    || | |  | |||   |||||||| ||| ||||||| ||||||||||| ||||||||||| ||   ||||||||| ||||||||||||||||||||||||||||||||||  |||||||
----------------------gcactctccatccatcctcttttccccta-tcttacttgtcatcatctcatctgatctgctcctctcgat--cagCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCG

upper sequence: GRMZM2G168257_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ11620 (Selaginella moellendorffii), 3'ss of exon 1
gtctcgctctctttcttcattagggtagggtatgtatccctcgtcctttgagtccgatggatctggatctca--tccctactcccctgcccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCG
                            |   || | | |  |  ||    |||           |||||||  |   |  ||   | ||   |||| |||||    ||   | ||  |||| ||||| ||    || |||||||||||||||||||| ||  ||||||| ||||| || ||||||| ||| ||| |||
--------------------------gtgaattgcagctccagatctgcttgtctttc---cacagatctcaagtggttgttcgatttccttccagCTGCTCGTTCACC---GTTGCCGCGAATGCGGCCAACCGCTACCCGAGAGCTACGAGCCGCCAGCGAACGAGCCGTGGACGACAGGGATCTGCGGCTGCGCCG

upper sequence: GRMZM2G168257_T02 (Zea mays), 3'ss of exon 1
lower sequence: EFJ09771 (Selaginella moellendorffii), 3'ss of exon 1
gtctcgctctctttcttcattagggtagggtatgtatccctcgtcctttgagtccgatggatctggatctca--tccctactcccctgcccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCG
                            |   || | | |  |  ||    |||           |||||||  |   |  ||   | ||   |||| |||||    ||   | ||  |||| ||||| ||    || |||||||||||||||||||| ||  ||||||| ||||| || ||||||| ||| ||| |||
--------------------------gtgaattgcagctccagatctgcttgtctttc---cacagatctcaagtggttgttcgatttccttccagCTGCTCGTTCACC---GTTGCCGCGAATGCGGCCAACCGCTACCCGAGAGCTACGAGCCGCCAGCGAACGAGCCGTGGACGACGGGGATCTGCGGCTGCGCCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211308159|gb|FL336720.1|FL336720
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAG-TGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|71297782|gb|DR784844.1|DR784844
EST:     GCGAGCTCAACCAGCCAGTCCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: GCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211324717|gb|FL345167.1|FL345167
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGCAG                       
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGT-CC-C-GCAGgtctcgctct ... ccgacagc
EST: gi|26558176|gb|CA830411.1|CA830411
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGGCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|14202869|gb|BG836546.1|BG836546
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGARADCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211108628|gb|FL325825.1|FL325825
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|76013560|gb|DT940730.1|DT940730
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211293495|gb|FL337554.1|FL337554
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211036131|gb|FL344522.1|FL344522
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGA-GTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|22545513|gb|BU097872.1|BU097872
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|67024023|gb|CO452772.1|CO452772
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211347496|gb|FL349153.1|FL349153
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211095817|gb|FL316693.1|FL316693
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGA-GTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211520566|gb|FL367155.1|FL367155
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|15499343|gb|BI595856.1|BI595856
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211069884|gb|FL332501.1|FL332501
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAG-TGTAGCGAGTACGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211386033|gb|FL330045.1|FL330045
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGCAG                       
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGT-CC-C-GCAGgtctcgctct ... ccgacagc
EST: gi|211035770|gb|FL329850.1|FL329850
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211062342|gb|FL366075.1|FL366075
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211542947|gb|FL308364.1|FL308364
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGA-GTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211152489|gb|FL335976.1|FL335976
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211040604|gb|FL332001.1|FL332001
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGA-GTGTAGCGAGTGCGGTCAGGTCCTGCCCGAKAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211512681|gb|FL346135.1|FL346135
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGA-GTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|71443196|gb|DR824246.1|DR824246
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGCAG                       
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGT-CC-C-GCAGgtctcgctct ... ccgacagc
EST: gi|211134526|gb|FL362067.1|FL362067
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|71443195|gb|DR824245.1|DR824245
EST:     GCCCCGGCGAGCTCAACCAGCCAGATCACGTCCCGCAGCAG                       
genomic: GCCCCGGCGAGCTCAACCAGCCAGTTCACGT-CC-C-GCAGgtctcgctct ... ccgacagc
EST: gi|211330840|gb|FL319489.1|FL319489
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211107865|gb|FL338723.1|FL338723
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211500886|gb|FL346060.1|FL346060
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211349768|gb|FL343443.1|FL343443
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGA-GTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|149013707|gb|EE043160.2|EE043160
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|28910059|gb|CB331236.1|CB331236
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211333887|gb|FL365386.1|FL365386
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGA-GTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
EST: gi|211021405|gb|FL344421.1|FL344421
EST:     CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAG                         CTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC
genomic: CCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 95

CAGCCACCCGTCACGCTACGTCAAGCTCACCAAGGACCAGGACGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 72

CAGCCACCCGTCACGCTACGTCAAGCTCACCAAGGACCAGGACGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 149

CAGCCACCCGTCACGCTACGTCAAGCTCACCAAGGACCAGGACGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 95

CAGCCACCCGTCACGCTACGTCAAGCTCACCAAGGACCAGGACGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTTCACGTCCCGCAGgtctcgctct ... ccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcctttgagtccgatggatctggatctcatccctactcccctgcccgacagcagCTCGAAGGCCGGAGGTGTAGCGAGTGCGGTCAGGTCCTGCCCGAGAGCTACGAGCCGCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGGATGCACCG
                         tctcatccctactccc  CT-rich tract