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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtagaattcgtttcagattaaagtggaaggaacatcttgtttcacttcaccactagctatagcatcgtatttatcctggtccatttcttggctagctagGTTTCATGTGCTTGCGGAGTTTGACGAGGCCAAGAGGAGCTGCCGGAAGCGGCTCACCGAGCACAACCGACGCCGCCGGAAGCCGATCAGCGCACAGGGC

Basic information

species Zea mays
transcript GRMZM2G168229_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168229_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g08070.1 (Oryza sativa), 3'ss of exon 1
agtagaattcgtttcagattaaagtggaaggaacatcttgtttcacttcaccactag--ctatagcatcgtatttatcctggtccat-ttcttggct-agctagGTTTCATGTGCTTGCGGAGTTTGACGAGGCCAAGAGGAGCTGCCGGAAGCGGCTCACCGAGCACAACCGACGCCGCCGGAAGCCGATCAGCGCACAGGGC-
  || | ||  |||    |   ||| | ||   |   |   |  | ||    ||||    ||||   ||   || ||     |   | |||||   |  |  ||||||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |  ||  | |    
-ttacagttaatttacagt---agtagcagtgtccattaagtctaatttggtactacatttatatattcagtttgatttaaatttgtgttcttaatttggacagGTTTCATGTGCTTGCTGAGTTTGATGAGGCGAAGAGGAGCTGCCGGAAGAGGCTCACCGAGCACAACCGCCGCCGCCGGAAGCCCACCGCCG-GCGGCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcaccactagctatagcatcgtatttatcctggtccatttcttggctagctagGTTTCATGTGCTTGCGGAGTTTGACGAGGCCAAGAGGAGCTGCCGGAAGCGGCTCACCGAGCACAACCGACGCCGCCGGAAGCCGATCAGCGCACAGGGC
                                       tttcttg  CT-rich tract
                       tatttat  TA-rich tract