Sequence
atgc intronic sequence ATGC exonic sequence...agcatggagtaatttatgatcattataaggaacttctgttattgtacaagcaccttatttattccctgaaagtttacagctatttcatttcattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAGGCTCTGATGCGTTTGTTATGGGATTGAGTTCTGCTCAATCACAGCTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G167999_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os12g06810.3 (Oryza sativa), 3'ss of exon 6
------agcatggagtaatttatgatcattataaggaacttctgttattgtacaagcaccttatttattccctgaaagtttacagctatttcatttcattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAGGCTCTGA---TGCGTTTGTTATGGGATTGAGTTCTGCTCAATCACAGCTCT---
|| | | | | ||| || || || | | || |||| | || | ||| | | || || | | ||||| ||||||||||||||||||||||||| |||||||| ||| | |||| ||||||| |||| | |||| |||||||||| ||||| |||||||| | |
agattgagtaggaaaaatgttaccattttt-tatagcaattttgttttgttattgctagactatcgtgtt-----atgtctattgaagctatatttctttgtacagGTAGCTAACTATGTGGTCGAGAAACT------TGATAGACCACTGGATGGCAATGCTGACAGCACATTTGGAATGGGATTGACTTCTGGCCAATCACAATTTTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32919528|gb|CF024340.1|CF024340EST: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG GTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGA
genomic: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAGgtaagatgtt ... cattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaagcaccttatttattccctgaaagtttacagctatttcatttcattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAGGCTCTGATGCGTTTGTTATGGGATTGAGTTCTGCTCAATCACAGCTCT
tttcatttc CT-rich tract
tatttcatttcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agcatggagtaatttatgatcattataaggaacttctgttattgtacaagcaccttatttattccctgaaagtttacagctatttcatttcattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAGGCTCTGATGCGTTTGTTATGGGATTGAGTTCTGCTCAATCACAGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC