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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttagtttcaatttattcagacttgttctttttgagtttcagaaccactgttctcatctcacaagtggcaacctttttctgtattatggtacattttcctaacctgaatcatattttgggttgatttgcagGTGTTGATATGCTTATGAAAGCCGCTGGGAAAGACCACTACATTGTTCA

Basic information

species Zea mays
transcript GRMZM2G167946_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167946_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g12830.3 (Oryza sativa), 3'ss of exon 3
gtaatctta-gtttcaatttattcagacttgttctttttgag---tttcagaaccactgttctcatctcacaagtggca-acctttttctgtattatggtacattttcctaacctgaatcatat---tttgggttgatttgcagGTGTTGATATGCTTATGAAAGCCGCTGGGAAAGACC--ACTACATTGTTCA
|||| | || |||| ||  |  |  |   |  |  |||       ||||  | |  |||||| | | |||||| |     |   ||    ||  |||  | | | |   | |  || | ||  |   |||  |   ||||||||| ||||||||||||||||| || ||||| ||||||   ||  |  ||||||
gtaaccataagttttaacctgatgtggaatacttgtttcagttcttttcgtagctgctgttcacct-tcacaatttctgcagacttcagagtgctata-tgcttctattttatgtgtaacaagtacttttatgggcatttgcagGAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCA

upper sequence: GRMZM2G167946_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g12830.2 (Oryza sativa), 3'ss of exon 3
gtaatc-ttagtttcaatttattcagacttgttctttttgag---tttcagaaccactgttctcatctcacaagtggca-acctttttctgtattatggtacattttcctaacctgaatcata---ttttgggttgatttgcagGTGTTGATATGCTTATGAAAGCCGCTGGGAAAGACC--ACTACATTGTTCA-------------------------------------------------
|||| | | ||||| ||  |  |  |   |  |  |||       ||||  | |  |||||| | | |||||| |     |   ||    ||  |||  | | | |   | |  || | ||     ||||  |   ||||||||| ||||||||||||||||| || ||||| ||||||   ||  |  ||||||                                                 
gtaaccataagttttaacctgatgtggaatacttgtttcagttcttttcgtagctgctgttcacct-tcacaatttctgcagacttcagagtgctata-tgcttctattttatgtgtaacaagtacttttatgggcatttgcagGAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCAGTATCCTTCTATTATTATTGTTCAAACATACTTTTAAAGTTGCCTGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgtattatggtacattttcctaacctgaatcatattttgggttgatttgcagGTGTTGATATGCTTATGAAAGCCGCTGGGAAAGACCACTACATTGTTCA
                              aatcatatttt  TA-rich tract