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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttccggtggttttcgcgtgcgatgagttgattatgcggcctggctatgggttccggtggttttcccgtgcgatgagttgattaatccgtggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCCGATGTCGTCCACCAGTTCTACAGCGAAGCCAGCACCATGGTCCGCGTCG

Basic information

species Zea mays
transcript GRMZM2G167932_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167932_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g03890.2 (Oryza sativa), 3'ss of exon 1
gttccggtggttttcgcgtgcgatgagttgattatgcggcctggctatgggttccggtggttttcccgtgcgatgagttgattaatccgtggcttggc-agGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCCGATGTCGTCCACCAGTTCTACAGCGAAGCCAGCACCATGGTCCGCGTCG
                       ||||| | || |     |    ||       |  | | |  | ||  || |   | | | |  || |  | |  | |||| || || |||||||| || |||||||||||||| ||||| || | |||||||||||||||||||||||||| ||| ||||||||||||||||||||||
----------------------gtgagt-gcttctctcctcaaaataaaccaaaccctagctcgctcgctcgctcgttcgctcaccccctctcctctctagGTCGGCACCTACTTCCTTCGCAACTACTACAACCTCCTGCAGCAGAGCCCCGATGTCGTCCACCAGTTCTACAACGACGCCAGCACCATGGTCCGCGTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211109944|gb|FL138530.1|FL138530
EST:     CTGGTGTCCCCTCTCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211278448|gb|FL138641.1|FL138641
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTSGGGACTTACTTCCTGCGGAACTACT
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACT
EST: gi|211288514|gb|FL071829.1|FL071829
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCG
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCG
EST: gi|211288515|gb|FL071830.1|FL071830
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACNACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211110863|gb|FL138547.1|FL138547
EST:     CTGGNGNCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211288518|gb|FL071833.1|FL071833
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211282050|gb|FL138662.1|FL138662
EST:     TGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGTGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTAC
genomic: TGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCG-GCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTAC
EST: gi|211111781|gb|FL138561.1|FL138561
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211288520|gb|FL071835.1|FL071835
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACNACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211288519|gb|FL071834.1|FL071834
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211288510|gb|FL071825.1|FL071825
EST:     CTGGTGTCCCCTCTCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgggttccggtggttttcccgtgcgatgagttgattaatccgtggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCCGATGTCGTCCACCAGTTCTACAGCGAAGCCAGCACCATGGTCCGCGTCG
                                  gattaat  putative branch site (score: 3)
                                ttgattaat  TA-rich tract