1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tagtagcttttatgttttcttgagttcggacattcaagtcatgtagatcttgtgccagtctgatgtggtagcgaagctgaccttgcatatatttcatcagGCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAATTTAGGCCAAAGAGGTTTTGGGGCGTCTACACCAAGCTGAAGATATTTA
species | Zea mays |
transcript | GRMZM2G166903_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAG --A--CGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAAEST: gi|101391009|gb|EB817440.1|EB817440
genomic: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAGgtctgctgaa ... atttcatcagGCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAA
EST: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAG GCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAAEST: gi|76294267|gb|DV033835.1|DV033835
genomic: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAGgtctgctgaa ... atttcatcagGCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAA
EST: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAG GCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAAEST: gi|89760628|gb|DY688960.1|DY688960
genomic: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAGgtctgctgaa ... atttcatcagGCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAA
EST: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAG GCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAAEST: gi|50326138|gb|CO521264.1|CO521264
genomic: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAGgtctgctgaa ... atttcatcagGCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAA
EST: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAG GCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAAEST: gi|149085755|gb|EE175275.2|EE175275
genomic: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAGgtctgctgaa ... atttcatcagGCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAA
EST: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAG GCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAAEST: gi|76283174|gb|DV022742.1|DV022742
genomic: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAGgtctgctgaa ... atttcatcagGCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAA
EST: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAG GCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAAEST: gi|211265631|gb|FL356999.1|FL356999
genomic: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAGgtctgctgaa ... atttcatcagGCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAA
EST: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAG GCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAA
genomic: TTGTGCTCGTCTCCGACGGCGTTTCCGAGTACTCGCGGAAGCTCCTACAGgtctgctgaa ... atttcatcagGCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAA
gatcttgtgccagtctgatgtggtagcgaagctgaccttgcatatatttcatcagGCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAATTTAGGCCAAAGAGGTTTTGGGGCGTCTACACCAAGCTGAAGATATTTA
agctgac putative branch site (score: 6)
tttcatc putative PPT
atatatttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtagcttttatgttttcttgagttcggacattcaagtcatgtagatcttgtgccagtctgatgtggtagcgaagctgaccttgcatatatttcatcagGCAGACGGTTGGATCGTGAATCGTATAACGTTACTGGCTAATCCTAATCAATTTAGGCCAAAGAGGTTTTGGGGCGTCTACACCAAGCTGAAGATATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - -tttcttg
- - - - - - - - - - - - - - - cattcaa
- - - - - - - - - - - - - - - - - - - -catgtag
- - - - - - - - - - - - - - - - - - - - - - - - cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgca