Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgctattgggtggtcatggttcctttgtctgaacatgcttgtgcttgccatattatgcattccgacattatatcgttgaatggttatttccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCG

Basic information

species Zea mays
transcript GRMZM2G165998_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165998_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g06620.1 (Oryza sativa), 3'ss of exon 1
catgctat-tgggtggtcatggttcctttgtctgaacatgcttgtgcttgccatattatgcattccgacattatatcgttgaatggttatttccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCG
 || | |  |   |  |  | | |  ||   ||  || |      |   |  |||   ||  |       || |   ||    ||   ||| | |   |||| ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
gatacaacgtaaattatgttagatgtttaaactagacctcagatagtgggttatacc-tgtttctacttgttctgaagtatgttgtccattgctaatttagGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15208775|gb|BI430659.1|BI430659
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|28910026|gb|CB331220.1|CB331220
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32918894|gb|CF023706.1|CF023706
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32915127|gb|CF019939.1|CF019939
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|38502592|gb|CF972452.1|CF972452
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211136266|gb|FL235028.1|FL235028
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|15426654|gb|BI542476.1|BI542476
EST:     CGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: CGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|31250447|gb|CD219471.1|CD219471
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|76914861|gb|DV165725.1|DV165725
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32915396|gb|CF020208.1|CF020208
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGGGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|31998224|gb|CD661987.1|CD661987
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211137227|gb|FL235054.1|FL235054
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211137217|gb|FL235044.1|FL235044
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|33101137|gb|CF061097.1|CF061097
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211136272|gb|FL235034.1|FL235034
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGAACGACAGTGAAGA
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGG-ACGACAGTGAAGA
EST: gi|211136265|gb|FL235027.1|FL235027
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGGACGACAGTGAAGA
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACAT-GGACGACAGTGAAGA
EST: gi|211135333|gb|FL235021.1|FL235021
EST:     GCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: GCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|74238453|gb|DT646367.1|DT646367
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32908434|gb|CF013247.1|CF013247
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGGTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|40287017|gb|CK327409.1|CK327409
EST:     AGGAGCAGCTACACTGCGGACGGGCTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211135336|gb|FL235024.1|FL235024
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211136269|gb|FL235031.1|FL235031
EST:     GCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: GCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|9731247|gb|BE509999.1|BE509999
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32916516|gb|CF021328.1|CF021328
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGGGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|71442963|gb|DR824013.1|DR824013
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|31611894|gb|CD568516.1|CD568516
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211135334|gb|FL235022.1|FL235022
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|24934953|gb|BQ619277.2|BQ619277
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|5740095|gb|AI947785.1|AI947785
EST:     GACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: GACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32916506|gb|CF021318.1|CF021318
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGGGGAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|33101175|gb|CF061135.1|CF061135
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32861563|gb|CF001245.1|CF001245
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|31558579|gb|CD527791.1|CD527791
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|74242695|gb|DT650609.1|DT650609
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211137218|gb|FL235045.1|FL235045
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32919375|gb|CF024187.1|CF024187
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGCCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|89250869|gb|DY622655.1|DY622655
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|61236444|gb|DN586197.1|DN586197
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAGGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32864327|gb|CF004009.1|CF004009
EST:     TGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: TGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32916207|gb|CF021019.1|CF021019
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|111990462|gb|EE331881.1|EE331881
EST:     CACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAACGCATGGTACATGGATGACAGTGAAGA
genomic: CACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAA-GCATGGTACATGGACGACAGTGAAGA
EST: gi|74034874|gb|DT535365.1|DT535365
EST:     CTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGAGATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: CTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32916976|gb|CF021788.1|CF021788
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32858130|gb|CD997811.1|CD997811
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32858765|gb|CD998446.1|CD998446
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211135335|gb|FL235023.1|FL235023
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32908972|gb|CF013785.1|CF013785
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|60353028|gb|DN220001.1|DN220001
EST:     CGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: CGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211137225|gb|FL235052.1|FL235052
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211137219|gb|FL235046.1|FL235046
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32851451|gb|CD991132.1|CD991132
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|47961614|gb|CN844323.1|CN844323
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|5895571|gb|AW036817.1|AW036817
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|5901199|gb|AW042299.1|AW042299
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|76292805|gb|DV032373.1|DV032373
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211137220|gb|FL235047.1|FL235047
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|33102555|gb|CF062515.1|CF062515
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|193502968|gb|AM938541.1|AM938541
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32867090|gb|CF006772.1|CF006772
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|108823936|gb|EC277944.1|EC277944
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211136278|gb|FL235040.1|FL235040
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211137222|gb|FL235049.1|FL235049
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|6101945|gb|AW126415.1|AW126415
EST:     GGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: GGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32865959|gb|CF005641.1|CF005641
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32868008|gb|CF007690.1|CF007690
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|116820267|gb|EC863478.1|EC863478
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|44681892|gb|CK786940.1|CK786940
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|15100561|gb|BI396352.1|BI396352
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|108824274|gb|EC278282.1|EC278282
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|26457355|gb|CA828938.1|CA828938
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACACTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211137224|gb|FL235051.1|FL235051
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211136271|gb|FL235033.1|FL235033
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32866799|gb|CF006481.1|CF006481
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|211136279|gb|FL235041.1|FL235041
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32913435|gb|CF018247.1|CF018247
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|37400731|gb|CF637725.1|CF637725
EST:     GCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATTGTACATGGACGACAGTGAAGAG
genomic: GCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32933164|gb|CF037976.1|CF037976
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32910309|gb|CF015121.1|CF015121
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|44681879|gb|CK786927.1|CK786927
EST:     AGGAGCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG
EST: gi|32910482|gb|CF015294.1|CF015294
EST:     AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAG                         GTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGATGACAGTGAAGAG
genomic: AGGACCAGCTACACTGCGGACGGACTTCGGGCATGGAGGGCCAGTTCCAGgtaccggcaa ... tccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgccatattatgcattccgacattatatcgttgaatggttatttccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCG
                                        ttatttcc  CT-rich tract
                     acattatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catgctattgggtggtcatggttcctttgtctgaacatgcttgtgcttgccatattatgcattccgacattatatcgttgaatggttatttccatcatagGTTGGCAAGGAGGAGGTCATCCAAGCATGGTACATGGACGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
catgcta
- - - - - - - - - - - - - - - - - - atgcttg
- - - - - - - - - - - - - - - - - - - - - -tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaatg