Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgggattcccggccccttcgtctgatgcgttttctttgtctcgttactctcgctgaatctttcacggactgtgcgaatgccatgtttctgcttgggttccagTTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACCGGCAGGCTCGGCGCGCTCGCTGCAGCGCTCAGCACATCTGGCCACCGGG

Basic information

species Zea mays
transcript GRMZM2G165945_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148936576|gb|EC880696.2|EC880696
EST:     GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGGCTGCCCTGGT                         TTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACC
genomic: GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGGCTGCCCTGGTgtgagtggga ... tgggttccagTTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACC
EST: gi|149078161|gb|EE166908.2|EE166908
EST:     GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGGCTGCCCTGGT                         TTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACC
genomic: GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGGCTGCCCTGGTgtgagtggga ... tgggttccagTTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACC
EST: gi|78087675|gb|DV516068.1|DV516068
EST:     GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGGCTGCCCTGGT                         TTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACC
genomic: GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGGCTGCCCTGGTgtgagtggga ... tgggttccagTTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACC
EST: gi|211087995|gb|FL069851.1|FL069851
EST:     GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGS-TGCCCTGGT                         TTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCG
genomic: GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGGCTGCCCTGGTgtgagtggga ... tgggttccagTTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCG
EST: gi|211090433|gb|FL069853.1|FL069853
EST:     GAGGACGCCGTCTCGCCCGCYGCCGCCGACGACGTGGC-GCTGCCCTGGT                         TTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACC
genomic: GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGGCTGCCCTGGTgtgagtggga ... tgggttccagTTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACC
EST: gi|211090439|gb|FL069859.1|FL069859
EST:     GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGGCTGCCCTGGT                         TTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACC
genomic: GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGGCTGCCCTGGTgtgagtggga ... tgggttccagTTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACC
EST: gi|71308123|gb|DR790286.1|DR790286
EST:     GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGGCTGCCCTGGT                         TTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACC
genomic: GAGGACGCCGTCTCGCCCGCCGCCGCCGACGACGTGGCGGCTGCCCTGGTgtgagtggga ... tgggttccagTTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcgctgaatctttcacggactgtgcgaatgccatgtttctgcttgggttccagTTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACCGGCAGGCTCGGCGCGCTCGCTGCAGCGCTCAGCACATCTGGCCACCGGG
                                     tttctgctt  CT-rich tract
        aatcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgggattcccggccccttcgtctgatgcgttttctttgtctcgttactctcgctgaatctttcacggactgtgcgaatgccatgtttctgcttgggttccagTTCCAGGGGCGGCTTGATCCAGAAGGTGGCTGCCGGCGGCGGGCGGAGACCGGCAGGCTCGGCGCGCTCGCTGCAGCGCTCAGCACATCTGGCCACCGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG