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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgacatgcgccctgctgccgtttctcgctccgagaactccgatccctaactaatctcccatcgtgttggttttcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG

Basic information

species Zea mays
transcript GRMZM2G165926_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 3'ss of exon 1
gtacgacatgcgccctgctgccgtttctcgctccga-----------gaactccgatcc-ctaactaatctcccatcgtgt-tggttttccttt--gcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG
|| || |  ||  |  || ||| |  ||| | | ||           || ||| ||| | || | | ||| |   |  ||  ||| |  ||| |  |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| |||||||| |||||||| ||||||||||||||||| |
gttcgccgcgcagctcgccgccctccctcccacagatcgatttcgccgagctctgattcacttatttatcgctttttttgcgtggctcccctctccgcagGCGACGATGATCTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTG

upper sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G05250.2 (Glycine max), 3'ss of exon 1
--------------------------------------gtacgacatgcgccctgctgccgtttctcgctccgagaactc-cgatccctaactaatctcccatcg----tgttggttttcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG
                                        |  ||   | |  | || |  |   |        |  ||  ||||| ||   | |||||  ||      | || ||      |   |||| || |||||||| || |||||||||||||||||||| ||||| || ||| |||| || || || || || ||  | || |||||||| || || ||||
gtaaaccctgtttctccttcgtcttaatttcagccatgccattacgatccctttactccaatcaattagggtttgttctttcgatcacttgtttatctctaattactattttttgtgcgtaataatagGCGACTATGATCTGTATTGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAACAGACGCCGTCAATCTTATTTGCG

upper sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA01G36990.1 (Glycine max), 3'ss of exon 1
-----------------------------gtacgacatgcgccctgctgccgtttctcgctccgagaactccg-atccc--taactaatctcccatcgtgttggttttcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG
                              | | ||| ||       | ||  || |           ||     |  |  || |   | |  |||||| ||| ||| | |   ||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||| |||| || || || || || || || || || || || ||||| ||||
gtaatccccgatttcccctcgtgcgttgatttcaacaagcttatcattaccaatttttagggttttttcttgatgttgcggtagcagttttttcatcgtattgattt-cttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGTGATTACTCTCCTTCTCGATTTCAAGCTCAAGCAGACGCTGTGAATCTCATTTGCG

upper sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA11G08290.1 (Glycine max), 3'ss of exon 1
--------------------------gtacgacatgcgccctgctgccg-tttctcgctccgagaactccgatccc-taactaatctcccatcgtgttggttttcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG
                            |   ||  |  ||   | ||  ||||| |       |     | | |  ||||  || |   || || |||  |||| |   ||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||| |||| || || || || || || || || || ||||| ||||| ||||
gtaatcccagatttcccctcgtgcgttgatttcagacagccccataccaatttctagggtttttattgatgttgcggtaacatatgtttgattgtattg-ctttcttcaacagGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGAGATTACTCTCCTTCTCGATTTCAAGCTCAAGCAGACGCTGTCAATCTCATATGCG

upper sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G23590.1 (Glycine max), 3'ss of exon 1
------------------------------------------------------------------------------gtacga-catgcgccctgctgccgtttctcgctccgagaactccgatccctaactaatctcccat-cgtgttggttttcctttgca---gGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG
                                                                               |  || ||  ||     |     || ||   |  | |        |   |   |         |  ||||  || |   | |  |   ||| || |||||||| ||||||||||||||||||||||| ||||| || ||| |||| || || || || || || || || |||| ||| ||||| ||||
gtaaatcccttttctccttcgtcttaatttcagccatgccactacaatccctttaatccaatcaattagggtttgttcatttgatcactcgtttatcactaattgctttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataatagGCGACTATGATCTGTATAGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCG

upper sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA01G36990.2 (Glycine max), 3'ss of exon 1
-----------------------------gtacgacatgcgccctgctgccgtttctcgctccgagaactccg-atccc--taactaatctcccatcgtgttggttttcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG
                              | | ||| ||       | ||  || |           ||     |  |  || |   | |  |||||| ||| ||| | |   ||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||| |||| || || || || ||                             
gtaatccccgatttcccctcgtgcgttgatttcaacaagcttatcattaccaatttttagggttttttcttgatgttgcggtagcagTTTTTTCATCGTATTGATTT-CTTCAACAGGCGACGATGATCTGTATCGACAATTCTGAATGGATGCGTAACGGTGATTACTCTCCTTCTCGATTTCAAGC-----------------------------

upper sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G23590.2 (Glycine max), 3'ss of exon 1
------------------------------------------------------------------------------gtacga-catgcgccctgctgccgtttctcgctccgagaactccgatccctaactaatctcccat-cgtgttggttttcctttgca---gGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG--------------
                                                                               |  || ||  ||     |     || ||   |  | |        |   |   |         |  ||||  || |   | |  |   ||| || |||||||| ||||||||||||||||||||||| ||||| || ||| |||| || || || || || || || || |||| ||| ||||| ||||              
gtaaatcccttttctccttcgtcttaatttcagccatgccactacaatccctttaatccaatcaattagggtttgttcatttgatcactcgtttatcactaattgctttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataataggcgactatgatctgtatagACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAG

upper sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ17485 (Selaginella moellendorffii), 3'ss of exon 1
gtacgacatgcgccctgctgccgtttctcgctccgagaactccgatccctaactaatctcccatcgtgttggttttcctttg---cagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCG---GTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG
                                  |  | ||||  || | | ||    || |  |  |    | |||  |||   ||||| ||||||||||||||||||||||| || |||||||| || || ||||||  |||| || |    |||||| | || || ||||| ||||| || ||||   
----------------------------------gtaagctcc--tcgcgatct---ttcacgccaggcctatcttctcttgtgccagGCGACGATGATCTGCATAGACAATTCCGAGTGGATGCGAAATGGGGACTACTATCCGACGAGTAGATTCCAGTCCCAAGCTGATGCTGTCAATCTTATCT---

upper sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 1
lower sequence: EFJ28815 (Selaginella moellendorffii), 3'ss of exon 1
gtacgacatgcgccctgctgccgtttctcgctccgagaactccgatccctaactaatctcccatcgtgttggttttcctttg---cagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCG---GTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG
                                  |  | ||||  || | | ||    || |  |  |    | |||  |||   ||||| ||||||||||||||||||||||| || |||||||| || || ||||||  |||| || |    |||||| | || |||||||| ||||| || ||||   
----------------------------------gtaagctcc--tcgcgatct---ttcacgccaggcctatcttctcttgtgccagGCGACGATGATCTGCATAGACAATTCCGAGTGGATGCGAAATGGGGACTACTATCCGACGAGTAGATTCCAGTCCCAAGCCGATGCTGTCAATCTTATCT---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211424106|gb|FL416822.1|FL416822
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211184475|gb|FL377616.1|FL377616
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|28987670|gb|CB351750.1|CB351750
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGG-GCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211022764|gb|FL415058.1|FL415058
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211147697|gb|FL418240.1|FL418240
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211275084|gb|FL386564.1|FL386564
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211113040|gb|FL406956.1|FL406956
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211063824|gb|FL422604.1|FL422604
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211114756|gb|FL427457.1|FL427457
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211187018|gb|FL384708.1|FL384708
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211344022|gb|FL411922.1|FL411922
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211503963|gb|FL378777.1|FL378777
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211527200|gb|FL395771.1|FL395771
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211232447|gb|FL422709.1|FL422709
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATRGTGCTCKAG                         GCAACGATGATCTGCATASACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211527211|gb|FL395782.1|FL395782
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211143208|gb|FL408627.1|FL408627
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211054284|gb|FL399893.1|FL399893
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211148658|gb|FL386501.1|FL386501
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211537119|gb|FL426923.1|FL426923
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211527210|gb|FL395781.1|FL395781
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211307281|gb|FL401385.1|FL401385
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211408195|gb|FL391585.1|FL391585
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211011982|gb|FL416040.1|FL416040
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211263889|gb|FL391944.1|FL391944
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|34391254|gb|CF384482.1|CF384482
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|31664309|gb|CD573034.1|CD573034
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGG-GGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211360521|gb|FL385274.1|FL385274
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAA
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAA
EST: gi|211124056|gb|FL408223.1|FL408223
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211296433|gb|FL375537.1|FL375537
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211305475|gb|FL415757.1|FL415757
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211316901|gb|FL369687.1|FL369687
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211092224|gb|FL378433.1|FL378433
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211439147|gb|FL388418.1|FL388418
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211448431|gb|FL421136.1|FL421136
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211043017|gb|FL421681.1|FL421681
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCGRCGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211520750|gb|FL372658.1|FL372658
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211053978|gb|FL385080.1|FL385080
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211441973|gb|FL416344.1|FL416344
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211429413|gb|FL420679.1|FL420679
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211395632|gb|FL405425.1|FL405425
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|148954523|gb|EC899958.2|EC899958
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211264091|gb|FL400958.1|FL400958
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211343661|gb|FL392038.1|FL392038
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211126365|gb|FL382914.1|FL382914
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211436970|gb|FL408932.1|FL408932
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211298705|gb|FL383932.1|FL383932
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211133670|gb|FL369480.1|FL369480
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211518320|gb|FL387244.1|FL387244
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211120944|gb|FL412610.1|FL412610
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAA-GGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211151582|gb|FL387834.1|FL387834
EST:     ACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: ACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|28987468|gb|CB351650.1|CB351650
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211284022|gb|FL376855.1|FL376855
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211430981|gb|FL370244.1|FL370244
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211448437|gb|FL421142.1|FL421142
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|71419001|gb|DR804614.1|DR804614
EST:     CACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: CACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211415553|gb|FL372637.1|FL372637
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211363462|gb|FL398802.1|FL398802
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211204240|gb|FL383409.1|FL383409
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211225557|gb|FL386125.1|FL386125
EST:     GCCCTGACACCGGCAGCGACACGT-CACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|40334578|gb|CK368648.1|CK368648
EST:     GACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211008589|gb|FL393576.1|FL393576
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211413299|gb|FL391618.1|FL391618
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211229603|gb|FL380020.1|FL380020
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211533209|gb|FL395808.1|FL395808
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCG-CATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211042757|gb|FL410368.1|FL410368
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
EST: gi|211439859|gb|FL422473.1|FL422473
EST:     GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAG                         GCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC
genomic: GCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 2 RNA-Seq libraries.


Block sizes: 25 (upstream exon), 49 (downstream exon)
Score: 4

GTCTCCTAATAACTAGTTTCTATCTTGCTCCCCAAACCAGCGCAAACCCTGCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG


Block sizes: 28 (upstream exon), 49 (downstream exon)
Score: 3

GTCTCCTAATAACTAGTTTCTATCTTGCTCCCCAAACCAGCGCAAACCCTGCCCTGACACCGGCAGCGACACGTCCACCGGCGGCGCCATGGTGCTCGAGgtacgacatg ... tcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccgagaactccgatccctaactaatctcccatcgtgttggttttcctttgcagGCAACGATGATCTGCATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCG
                    aactaat  putative branch site (score: 3)
                                          ttttcctttgc  putative PPT
                   taactaat  TA-rich tract