1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtgatgcgattagccgagcgattctcccgaccctgggggctgtgcgccaaacccttaacccttacctgtaagtatttttgggtatgaattgtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG
species | Zea mays |
transcript | GRMZM2G165195_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGCGCCGCCTNCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAA-CCATCAGGGAGGCTGCCAEST: gi|91052905|gb|EB163323.1|EB163323
genomic: CAGCGCCGCCT-CCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
EST: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAEST: gi|148991100|gb|EE032548.2|EE032548
genomic: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
EST: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAEST: gi|71765372|gb|DR963309.1|DR963309
genomic: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
EST: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAEST: gi|91054729|gb|EB165147.1|EB165147
genomic: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
EST: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAEST: gi|76281953|gb|DV021521.1|DV021521
genomic: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
EST: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAEST: gi|76010551|gb|DT937721.1|DT937721
genomic: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
EST: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
genomic: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
gccaaacccttaacccttacctgtaagtatttttgggtatgaattgtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG
cccttac putative branch site (score: 3)
ttgttttt putative PPT
tatgaattgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgcgattagccgagcgattctcccgaccctgggggctgtgcgccaaacccttaacccttacctgtaagtatttttgggtatgaattgtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG