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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttcattccatgtttagatttctccttaattaattccttcatcttcgtcaactgtcatgctactcactactctgacactcacaatccatctcaacttgttaccctacattatgtatgtatgtatgtttatttgttttattccctgctaggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCCCGTCTTCCTCGCCTG

Basic information

species Zea mays
transcript GRMZM2G164916_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211278360|gb|FL132343.1|FL132343
EST:     TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA                         AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: gi|211278361|gb|FL132344.1|FL132344
EST:     TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA                         AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: gi|211278362|gb|FL132345.1|FL132345
EST:     TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA                         AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: gi|211404678|gb|FL116464.1|FL116464
EST:     TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAGGGCCGCA                  
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCG-A-------Agtgagcttca ... ggg
EST: gi|211404678|gb|FL116464.1|FL116464
EST:     TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAGGGCCGCA                  
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCG-A-------Agtgagcttca ... ggg
EST: gi|211432715|gb|FL449161.1|FL449161
EST:     TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA                         AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: gi|9952394|gb|BE638977.1|BE638977
EST:     TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA                         AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: gi|71775257|gb|DR973135.1|DR973135
EST:     TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA                         AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: gi|76018661|gb|DT945831.1|DT945831
EST:     TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA                         AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: gi|211280152|gb|FL132346.1|FL132346
EST:     TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA                         AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacattatgtatgtatgtatgtttatttgttttattccctgctaggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCCCGTCTTCCTCGCCTG
          tatgtatgtatgttta  TA-rich tract