Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgctgatattttcgatttccttctagattcgactccgcaagcgatttgttcgcgcgccactttgcctttagaggttagcattatctgtctcgcgtctgacgattctggactaacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGCAGGGCCATGCTCCAGGCCTACCGCCAGGCCATCGTCA

Basic information

species Zea mays
transcript GRMZM2G164475_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164475_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g73020.1 (Oryza sativa), 3'ss of exon 1
gtgcgctgatattttcgatttccttct---agattcgactcc-gcaagcgatttgttcgcgc--gccactttgcctttagaggttagcattatc--tgtctcgcgtctga------cgattctgga----ctaacaca-cagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGCAGGGCCATGCTCCAGGCCTACCGCCAGGCCATCGTCA
||  ||||||| |   ||||| ||| |    |||| |  |   || || | |||||||  |     |  |   | ||||||  |||||   |     | |  || ||| |      |  || || |    ||||     ||||| |  |||||||||||||||||  ||||||| ||||| |||||| | |||||||||  | ||||||| || ||||| ||||||||||
gtatgctgataatg--gattttcttttttcggatttgttttttgctagtgttttgttcttgttaatccttccccttttagaacttagccccaatgtcgccgtgcttctaatttacccttttttgaaactcctaatttgtcagGCTGCTAGGCTTCTCGCGAATCTCCTCGTCATCGGCGGCACCGTGCTGGGCAGGGCCGCGGTCCAGGCGTATCGCCAAGCCATCGTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71440766|gb|DR821816.1|DR821816
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211095763|gb|FL084737.1|FL084737
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|32917288|gb|CF022100.1|CF022100
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211090829|gb|FL084713.1|FL084713
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211093285|gb|FL084721.1|FL084721
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211093288|gb|FL084724.1|FL084724
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|22133685|gb|BQ833849.1|BQ833849
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|18178699|gb|BM379909.1|BM379909
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211093294|gb|FL084730.1|FL084730
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|87155946|gb|DY400735.1|DY400735
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|71769951|gb|DR967888.1|DR967888
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|17932043|gb|BM269003.1|BM269003
EST:     CAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: CAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|26558360|gb|CA830595.1|CA830595
EST:     TCCTCTTCGTCG-CGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCA-GCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGGTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|37377317|gb|CF625253.1|CF625253
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211093287|gb|FL084723.1|FL084723
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211095764|gb|FL084738.1|FL084738
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211093283|gb|FL084719.1|FL084719
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211095761|gb|FL084735.1|FL084735
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211093284|gb|FL084720.1|FL084720
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211093293|gb|FL084729.1|FL084729
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211095768|gb|FL084742.1|FL084742
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|37397242|gb|CF635916.1|CF635916
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|78027232|gb|DV495619.1|DV495619
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|32866372|gb|CF006054.1|CF006054
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211095765|gb|FL084739.1|FL084739
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211095770|gb|FL084744.1|FL084744
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211093291|gb|FL084727.1|FL084727
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211093290|gb|FL084726.1|FL084726
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|18162227|gb|BM332066.1|BM332066
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211095769|gb|FL084743.1|FL084743
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211095766|gb|FL084740.1|FL084740
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211090830|gb|FL084714.1|FL084714
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211093281|gb|FL084717.1|FL084717
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211095762|gb|FL084736.1|FL084736
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211090832|gb|FL084716.1|FL084716
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGT
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGT
EST: gi|211095760|gb|FL084734.1|FL084734
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
EST: gi|211093286|gb|FL084722.1|FL084722
EST:     TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATG                         GCGGGCAGGCTCCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC
genomic: TCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 46 (downstream exon)
Score: 31

GTCGCCTCCGCCTTCGCGATTCGCCGCCGTTGCCCACGAGCGAGGCTTCCTCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGCAGGGCCATGCTCCAGGCCTACCGCCAGGCCATCGTCA


Block sizes: 47 (upstream exon), 46 (downstream exon)
Score: 56

GTCGCCTCCGCCTTCGCGATTCGCCGCCGTTGCCCACGAGCGAGGCTTCCTCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGCAGGGCCATGCTCCAGGCCTACCGCCAGGCCATCGTCA


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 48

GTCGCCTCCGCCTTCGCGATTCGCCGCCGTTGCCCACGAGCGAGGCTTCCTCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGCAGGGCCATGCTCCAGGCCTACCGCCAGGCCATCGTCA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 59

GTCGCCTCCGCCTTCGCGATTCGCCGCCGTTGCCCACGAGCGAGGCTTCCTCCTCTTCGTCGCCGCCGTCGCAGGAGGGGAAAGAGGATAAACTGCCATGgtgcgctgat ... taacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGCAGGGCCATGCTCCAGGCCTACCGCCAGGCCATCGTCA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttagaggttagcattatctgtctcgcgtctgacgattctggactaacacacagGCGGGCAGGCTTCTCGCGAATCTAATCGTCATGGGCGGAACCGTGGTTGGCAGGGCCATGCTCCAGGCCTACCGCCAGGCCATCGTCA
                                          gactaac  putative branch site (score: 59)
              attatct  TA-rich tract