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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcaaccaaaagttttgttaaacttattctattttattttcttaggattttttatatagttacaaagctcttaatattgtttcctcatttatcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATTGCTGTACTGATTGACGAGCTCAAGAATGAAGACATCCAGTTGCGTCTAA

Basic information

species Zea mays
transcript GRMZM2G164352_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164352_T05 (Zea mays), 3'ss of exon 1
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 3'ss of exon 2
tgcaaccaaaagttttgttaaacttattctattttattttcttaggattttttatatagttacaaagctcttaatattgtttcctcatttatca-attcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATTGCTGTACTGATTGACGAGCTCAAGAATGAAGACATCCAGTTGCGTCTAA----------
         | || |||||  |   |||   |||| |||||  || |           | || |      |  |   || ||  |     |||   ||      |        | |  ||||||||||||||| |||||||| ||||||||||| ||  |||| || ||||||||||| || ||||| ||| | ||  | |          
--------gatgtgttgtttga---atttattttttttttccgagcaaccaaacaggggctatagttagatcgaatctggttgtttgaggatcttgtttccgcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGATCGATGAGCTCAAGAACGAGGACATTCAGCTTCGATTGAACTCGATCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28987127|gb|CB351477.1|CB351477
EST:     GTCGGCGAGGCTAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: GTCGGCGAGGC-AGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211269042|gb|FL404037.1|FL404037
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211202309|gb|FL411329.1|FL411329
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211037708|gb|FL424828.1|FL424828
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211325293|gb|FL368473.1|FL368473
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|31354796|gb|CD439153.1|CD439153
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211464366|gb|FL417641.1|FL417641
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211202324|gb|FL411797.1|FL411797
EST:     CCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGNTATGATTGATGAGCCTCTTTATCCAATT
genomic: CCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211194094|gb|FL377677.1|FL377677
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211392482|gb|FL384041.1|FL384041
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|31359817|gb|CD444174.1|CD444174
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211191765|gb|FL382158.1|FL382158
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211197000|gb|FL404857.1|FL404857
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211043183|gb|FL426510.1|FL426510
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211179792|gb|FL384664.1|FL384664
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211284174|gb|FL388278.1|FL388278
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211485706|gb|FL425939.1|FL425939
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTC-ATATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|6626421|gb|AW257953.1|AW257953
EST:     CACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGCTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211259445|gb|FL409697.1|FL409697
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211146399|gb|FL424898.1|FL424898
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|31353403|gb|CD437760.1|CD437760
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211479150|gb|FL394346.1|FL394346
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211102755|gb|FL409170.1|FL409170
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211296275|gb|FL370598.1|FL370598
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|67042213|gb|CO468468.1|CO468468
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211126364|gb|FL382913.1|FL382913
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211164536|gb|FL393748.1|FL393748
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211062961|gb|FL387713.1|FL387713
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211298795|gb|FL387919.1|FL387919
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211204893|gb|FL411808.1|FL411808
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|20507114|gb|BQ279491.1|BQ279491
EST:     CGTCGGCGAGGCAGCCGGCCGTGACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211042647|gb|FL405923.1|FL405923
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|31354949|gb|CD439306.1|CD439306
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211259260|gb|FL402691.1|FL402691
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211425983|gb|FL379148.1|FL379148
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|5268497|gb|AI770461.1|AI770461
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211116112|gb|FL407718.1|FL407718
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|21395260|gb|BQ539690.1|BQ539690
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|149077511|gb|EE166209.2|EE166209
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211022192|gb|FL381969.1|FL381969
EST:     CGTCGGCGAGGCAGCCGGCCGTCACANAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211223423|gb|FL379982.1|FL379982
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|31354876|gb|CD439233.1|CD439233
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAATCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|148936826|gb|EC880967.2|EC880967
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211171102|gb|FL381647.1|FL381647
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211227419|gb|FL371539.1|FL371539
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211280509|gb|FL386607.1|FL386607
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211219155|gb|FL370896.1|FL370896
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211048506|gb|FL403382.1|FL403382
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211458676|gb|FL386664.1|FL386664
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211294420|gb|FL383899.1|FL383899
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211271875|gb|FL420610.1|FL420610
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211269588|gb|FL427180.1|FL427180
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211087462|gb|FL386788.1|FL386788
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211379186|gb|FL376883.1|FL376883
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211122508|gb|FL412642.1|FL412642
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211298702|gb|FL383929.1|FL383929
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211121489|gb|FL373626.1|FL373626
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211502334|gb|FL413298.1|FL413298
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211410616|gb|FL382736.1|FL382736
EST:     CGTCGGC-AGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211203981|gb|FL374099.1|FL374099
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTC-ATATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211259416|gb|FL408761.1|FL408761
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211249403|gb|FL378143.1|FL378143
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|149000781|gb|EE038004.2|EE038004
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211089835|gb|FL381145.1|FL381145
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211464206|gb|FL411573.1|FL411573
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|31356243|gb|CD440600.1|CD440600
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCTCTCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211487813|gb|FL394400.1|FL394400
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211271478|gb|FL404046.1|FL404046
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211334204|gb|FL380512.1|FL380512
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|149075394|gb|EE163908.2|EE163908
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211464503|gb|FL427708.1|FL427708
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|6564112|gb|AW231734.1|AW231734
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGGTATACCTGGTGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|31361811|gb|CD446168.1|CD446168
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAC                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211201733|gb|FL385159.1|FL385159
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211113696|gb|FL397735.1|FL397735
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211079974|gb|FL413496.1|FL413496
EST:     CGTCGSAG-GGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211026769|gb|FL368582.1|FL368582
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|211309607|gb|FL417529.1|FL417529
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
EST: gi|37622060|gb|CF675113.1|CF675113
EST:     CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAG                         AAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT
genomic: CGTCGGCGAGGCAGCCGGCCGTCACAGAAGCCCGATCCGGACCCCGCGAGgtcagttgag ... atcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttttatatagttacaaagctcttaatattgtttcctcatttatcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATTGCTGTACTGATTGACGAGCTCAAGAATGAAGACATCCAGTTGCGTCTAA
                       tcttaat  putative branch site (score: 3)
                                  tttcctcatttatc  putative PPT
     tttatatagttacaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgcaaccaaaagttttgttaaacttattctattttattttcttaggattttttatatagttacaaagctcttaatattgtttcctcatttatcaattcagAAATCCTTGTTATACCTGATGGCTATGATTGATGAGCCTCTTTATCCAATTGCTGTACTGATTGACGAGCTCAAGAATGAAGACATCCAGTTGCGTCTAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA