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...tatggataggttgctagagtgagattgatgtgtattctttgccatgttcgttgctgctctttatactgatgaacgattgtaactgtgtctgcatgtggagATTGGAAGGAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGAGGATGCCAGAGCTGCGAAGCAGTACTCGCCAAGCATGCCTAAGGTCGAA
species | Zea mays |
transcript | GRMZM2G164265_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCG-- A-T-----GAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGAEST: gi|149102516|gb|EE188222.2|EE188222
genomic: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCGATgtaagcatcc ... gcatgtggagATTGGAAGGAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGA
EST: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCG-- A-T-----GAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGAEST: gi|148950416|gb|EC895983.2|EC895983
genomic: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCGATgtaagcatcc ... gcatgtggagATTGGAAGGAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGA
EST: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCG-- A-T-----GAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGAEST: gi|37419875|gb|CF647623.1|CF647623
genomic: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCGATgtaagcatcc ... gcatgtggagATTGGAAGGAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGA
EST: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCG-- A-T-----GAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGAEST: gi|87153711|gb|DY398500.1|DY398500
genomic: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCGATgtaagcatcc ... gcatgtggagATTGGAAGGAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGA
EST: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCGAT ATTGGAAGGAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGAEST: gi|78113587|gb|DV531978.1|DV531978
genomic: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCGATgtaagcatcc ... gcatgtggagATTGGAAGGAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGA
EST: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCG-- A-T-----GAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGAEST: gi|148950557|gb|EC896134.2|EC896134
genomic: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCGATgtaagcatcc ... gcatgtggagATTGGAAGGAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGA
EST: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCG-- A-T-----GAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGA
genomic: GACGAACCCGACCTCCTCCTCCGCGCCCGTCCCTGCCACCGGTCGCCGATgtaagcatcc ... gcatgtggagATTGGAAGGAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGA
gttcgttgctgctctttatactgatgaacgattgtaactgtgtctgcatgtggagATTGGAAGGAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGAGGATGCCAGAGCTGCGAAGCAGTACTCGCCAAGCATGCCTAAGGTCGAA
ttgtaac putative branch site (score: 39)
tctttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggataggttgctagagtgagattgatgtgtattctttgccatgttcgttgctgctctttatactgatgaacgattgtaactgtgtctgcatgtggagATTGGAAGGAGCTCGGAGGGCTGGGGCGCTGACCTGAGTTTTATGGAGAGAGGATGCCAGAGCTGCGAAGCAGTACTCGCCAAGCATGCCTAAGGTCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - ggttgct
- - - - - - - - - - - -attgatg
- - - - - - - - - - - - - - - - - - - - gccatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatga