Sequence
atgc intronic sequence ATGC exonic sequence...acatgttttcccactgtttattgtgtgtacaattatagaccattgtcatttattgtggctgcaaactaacttgaccttttcctgctttcattctctgcagTTGACATCATCTCAGCAATAGAGTTCAATAAATCAGGACATCATCTTGCCACTGGAGACAGAGGTGGACGAGTTGTTTTATTTGAAAGGACCGATGTCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G164185_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 3'ss of exon 1
acatgttttcccactgtttattgtgtgtacaattatagaccattgtcatttattgtggctgcaaactaacttgacctt------ttcctgctttcattctctgcagTTGACATCATCTCAGCAATAGAGTTCAATAAATCAGGACATCATCTTGCCACTGGAGACAGAGGTGGACGAGTTGTTTTATTTGAAAGGACCGATGTCAA
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-----tcttccctttatttcttg-atattaaataatagagtgacggagtataatatggttgtgaactgctttaacattactatgtttctcttgttcctttgtgtagTGGACATCATATCGGCAATAGAATTCAATAAATCAGGACAGCATCTTGCCACTGGGGACAGAGGGGGGCGAGTTGTTTTGTTTGAAAGGACAGATGCCAA
upper sequence: GRMZM2G164185_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S301_53V6.1 (Physcomitrella patens), 3'ss of exon 1
--acatgttttcccactgtttattgtgtgtacaattatagaccattgtcatttattgtggctgcaaact---aacttgaccttttcctgctttcattctctgcagTTGACATCATCTCAGCAATAGAGTTCAATAAATCAGGACATCATCTTGCCACTGGAGACAGAGGTGGACGAGTTGTTTTATTTGAAAGGACCGATGTCAA
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agtgaagggttttgatcgtcga--gtttatttcatc-tgggagatgggtattcat-atgtcgtcaatctctgaaccccaaattgatccattttgatgaa-tgcagTTGACATTATCTCGGCCATTGAGTTCGATAAAACTGGAGAGCATTTGGCAACTGGAGACCGAGGTGGACGAGTTGTTCTCTTTGAGAGAACGGATGGCAG
upper sequence: GRMZM2G164185_T02 (Zea mays), 3'ss of exon 1
lower sequence: PP1S100_124V6.1 (Physcomitrella patens), 3'ss of exon 1
--acatgttttcccactgtttattgtgtgtacaattatagaccattgtc-atttat-tgtggctgcaaactaacttgaccttttcctgctttcattctctgcagTTGACATCATCTCAGCAATAGAGTTCAATAAATCAGGACATCATCTTGCCACTGGAGACAGAGGTGGACGAGTTGTTTTATTTGAAAGGACCGATGTCAA
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gcccatgtttgtttatc--ttggcgagggcgatagtatttgctgttggggattcatatatgcttgtttctcaaatataaattgttttgttgt--atgaatgcagTTGACATCATCTCTGCTATTGAGTTTGATAAAACTGGAGAGCATTTGGCGACTGGAGACCGAGGAGGACGAGTTGTGCTGTTTGAGAGGACGGATGGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatttattgtggctgcaaactaacttgaccttttcctgctttcattctctgcagTTGACATCATCTCAGCAATAGAGTTCAATAAATCAGGACATCATCTTGCCACTGGAGACAGAGGTGGACGAGTTGTTTTATTTGAAAGGACCGATGTCAA
cttgaccttttcctgc CT-rich tract
aaactaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acatgttttcccactgtttattgtgtgtacaattatagaccattgtcatttattgtggctgcaaactaacttgaccttttcctgctttcattctctgcagTTGACATCATCTCAGCAATAGAGTTCAATAAATCAGGACATCATCTTGCCACTGGAGACAGAGGTGGACGAGTTGTTTTATTTGAAAGGACCGATGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA