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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcctgtcgtctccatgcaatgctctagtatgagagttttgttgtttcttggtctggtaaggttctagacttctgatgttcacagcaccttctgctgcagGGAATGATGCATCACCATGAACAGCAGCAAGCCTTCCACTCTGGTGCGCCGCATGGCATGATGGGACCAGGCGGCGTGAACTTCCCTCAGTCCTCCGGTC

Basic information

species Zea mays
transcript GRMZM2G163849_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163849_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g02290.1 (Oryza sativa), 3'ss of exon 1
tgcctgtcgtctccatgcaatgctctagtatgagagttttgttgt-ttcttggtctggtaaggttctagact---tctgatgttcacagcaccttctgctgcagGGAATGATGCATCACCATGA------------ACAGCAGCAAGCCTTCCACTCTGGTGCGCCGCATGGCATGATGGGACCAGGCGGCGTGAACTTCCCTCAGTCCTCCGGTC
    | ||||       |  || |    |  |   | |||| ||| ||  |||  || |    ||      |   ||| |        ||   |  || |||||| ||||||||||||||||||             ||||||||||  | ||  || || ||||||||||| |||||||||   || |||   |        |            
----tttcgttctgtctctctgtttgtatgggtttggtttggtgtgttgatggaatgctccaattgcgtggttggtctaaacgggttggcttgtgttgttgcagGCAATGATGCATCACCATGATCAGCAGCAGCAGCAGCAGCAAGGGTACCCATCGGGCGCGCCGCATGGTATGATGGGAGGTGGTGGCAGCAGTAGTTTCC------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttggtctggtaaggttctagacttctgatgttcacagcaccttctgctgcagGGAATGATGCATCACCATGAACAGCAGCAAGCCTTCCACTCTGGTGCGCCGCATGGCATGATGGGACCAGGCGGCGTGAACTTCCCTCAGTCCTCCGGTC
                         ttctgat  putative branch site (score: 3)
                                          ccttctgct  putative PPT