1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gagtgctaatagattttgaatttcagagctgtcagtgtccatttctgatgttcactcttggctgtataccataataacacacatttgttggttggttcagAGTGTTCTTGGAATCATTCTCGGAGGTGGTGCTGGGACTAGATTGTACCCCTTGACAAAGAAGCGTGCCAAGCCTGCAGTGCCATTGGGTGCCAACTATA
species | Zea mays |
transcript | GRMZM2G163437_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTCCGACTCTAAGAGCTCCCAGACCTGCCTCGACCCCGACGCCAGCACG AGTGTTCTTGGAATCATTCTCGGAGGTGGTGCTGGGACTAGATTGTACCCCEST: gi|71429623|gb|DR810673.1|DR810673
genomic: TGTCCGACTCTAAGAGCTCCCAGACCTGCCTCGACCCCGACGCCAGCACGgtatgccccg ... gttggttcagAGTGTTCTTGGAATCATTCTCGGAGGTGGTGCTGGGACTAGATTGTACCCC
EST: TGTCCGACTCTAAGAGCTCCCAGACCTGCCTCGACCCCGACGCCAGCACG AGTGTTCTTGGAATCATTCTCGGAGGTGGTGCTGGGACTAGATTGTACCCCEST: gi|148963182|gb|EE014154.2|EE014154
genomic: TGTCCGACTCTAAGAGCTCCCAGACCTGCCTCGACCCCGACGCCAGCACGgtatgccccg ... gttggttcagAGTGTTCTTGGAATCATTCTCGGAGGTGGTGCTGGGACTAGATTGTACCCC
EST: TGTCCGACTCTAAGAGCTCCCAGACCTGCCTCGACCCCGACGCCAGCACG AGTGTTCTTGGAATCATTCTCGGAGGTGGTGCTGGGACTAGATTGTACCCC
genomic: TGTCCGACTCTAAGAGCTCCCAGACCTGCCTCGACCCCGACGCCAGCACGgtatgccccg ... gttggttcagAGTGTTCTTGGAATCATTCTCGGAGGTGGTGCTGGGACTAGATTGTACCCC
tgatgttcactcttggctgtataccataataacacacatttgttggttggttcagAGTGTTCTTGGAATCATTCTCGGAGGTGGTGCTGGGACTAGATTGTACCCCTTGACAAAGAAGCGTGCCAAGCCTGCAGTGCCATTGGGTGCCAACTATA
taataac putative branch site (score: 298)
ataataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtgctaatagattttgaatttcagagctgtcagtgtccatttctgatgttcactcttggctgtataccataataacacacatttgttggttggttcagAGTGTTCTTGGAATCATTCTCGGAGGTGGTGCTGGGACTAGATTGTACCCCTTGACAAAGAAGCGTGCCAAGCCTGCAGTGCCATTGGGTGCCAACTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- -tgctaat
- - - - - - - - - - - - - -gctgtca
- - - - - - - - - - - - - - - - - - - - - -tctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgttg