1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgctgtactgtactgtacttgaccggtcagtcactcacggccacggttcctcttcgtcggccacgcgcccctgatgtgcgtttggtggcccagATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTCCAGAACCAGGTCCTTGAGCTGCAGCGCCAGCTCGCCGACCCGCCCGGAG
species | Zea mays |
transcript | GRMZM2G163233_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAACCGCAACATCCTCGCGCTCAGGGCCGTGGTGCCGAACATCACCAAG ATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTCEST: gi|78116860|gb|DV535247.1|DV535247
genomic: TCAACCGCAACATCCTCGCGCTCAGGGCCGTGGTGCCGAACATCACCAAGgtgctgtact ... ggtggcccagATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTC
EST: TCAACCGCAACATCCTCGCGCTCAGGGCCGTGGTGCCGAACATCACCAAG ATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTCEST: gi|211261608|gb|FL284013.1|FL284013
genomic: TCAACCGCAACATCCTCGCGCTCAGGGCCGTGGTGCCGAACATCACCAAGgtgctgtact ... ggtggcccagATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTC
EST: TCAACCGCAACATCCTCGCGCTCAGGGCCGTGGTGCCGAACATCACCAAG ATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTCEST: gi|211261606|gb|FL284011.1|FL284011
genomic: TCAACCGCAACATCCTCGCGCTCAGGGCCGTGGTGCCGAACATCACCAAGgtgctgtact ... ggtggcccagATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTC
EST: TCAACCGCAACATCCTCGCGCTCAGGGCCGTGGTGCCGAACATCACCAAG ATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTCEST: gi|211261607|gb|FL284012.1|FL284012
genomic: TCAACCGCAACATCCTCGCGCTCAGGGCCGTGGTGCCGAACATCACCAAGgtgctgtact ... ggtggcccagATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTC
EST: TCAACCGCAACATCCTCGCGCTCAGGGCCGTGGTGCCGAACATCACCAAG ATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTCEST: gi|211261609|gb|FL284014.1|FL284014
genomic: TCAACCGCAACATCCTCGCGCTCAGGGCCGTGGTGCCGAACATCACCAAGgtgctgtact ... ggtggcccagATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTC
EST: TCAACCGCAACATCCTCGCGCTCAGGGCCGTGGTGCCGAACATCACCAAG ATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTC
genomic: TCAACCGCAACATCCTCGCGCTCAGGGCCGTGGTGCCGAACATCACCAAGgtgctgtact ... ggtggcccagATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTC
ggccacggttcctcttcgtcggccacgcgcccctgatgtgcgtttggtggcccagATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTCCAGAACCAGGTCCTTGAGCTGCAGCGCCAGCTCGCCGACCCGCCCGGAG
ccctgat putative branch site (score: 62)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctgtactgtactgtacttgaccggtcagtcactcacggccacggttcctcttcgtcggccacgcgcccctgatgtgcgtttggtggcccagATGAGCAAGGAGTCCACCCTCTCGGACGCTATCGACCTCATCAAGAGGCTCCAGAACCAGGTCCTTGAGCTGCAGCGCCAGCTCGCCGACCCGCCCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC