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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagagttcgttccggttctccttttcccattttcgtttccgcgagcaatcgattccatatctgtgttctgacatggattcatccacttttttcgcattgagctcgtccccgatcttcgttgcattttcctttttttctttttgcagGGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTGTCGGCGCACTCGCCCGATCACAAGCGCCCCTCTCAGCAGCCGGGTGTAG

Basic information

species Zea mays
transcript GRMZM2G163159_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76915250|gb|DV165902.1|DV165902
EST:     TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTG                         GGGATGGAGGTGCAGGTGCTGGA
genomic: TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTGgtaaagagtt ... ctttttgcagGGGATGGAGGTGCAGGTGCTGGA
EST: gi|91055608|gb|EB166026.1|EB166026
EST:     TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTG                         GGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
genomic: TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTGgtaaagagtt ... ctttttgcagGGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
EST: gi|71441312|gb|DR822362.1|DR822362
EST:     TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTG                         GGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
genomic: TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTGgtaaagagtt ... ctttttgcagGGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
EST: gi|148950972|gb|EC896614.2|EC896614
EST:     TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTG                         GGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
genomic: TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTGgtaaagagtt ... ctttttgcagGGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
EST: gi|211541919|gb|FL379339.1|FL379339
EST:     CCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTG                         GGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
genomic: TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTGgtaaagagtt ... ctttttgcagGGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
EST: gi|78093037|gb|DV521411.1|DV521411
EST:     TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTG                         GGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
genomic: TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTGgtaaagagtt ... ctttttgcagGGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
EST: gi|148937965|gb|EC882198.2|EC882198
EST:     TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTG                         GGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
genomic: TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTGgtaaagagtt ... ctttttgcagGGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
EST: gi|76013840|gb|DT941010.1|DT941010
EST:     TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTG                         GGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG
genomic: TCCGGCGGCTTGGATCTATGCGGACCCGGCATCTGTATTTTACCTCATTGgtaaagagtt ... ctttttgcagGGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgcattgagctcgtccccgatcttcgttgcattttcctttttttctttttgcagGGGATGGAGGTGCAGGTGCTGGATTTGTCTTCCGATTCCGAGGGCGAGGTGTCGGCGCACTCGCCCGATCACAAGCGCCCCTCTCAGCAGCCGGGTGTAG
              tccccgatcttcgttg  CT-rich tract
                                      tttttttcttttt  TA-rich tract