Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcacaagtttatgacgtgatctagtgagcattatgctactcagagtacaaaataacaagtagatttactttttaacatgtataatggtgctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGATCCGGCTTCCGCAGACGGATTTACTGTCATATTCAACAAAGCCAGAGATG

Basic information

species Zea mays
transcript GRMZM2G162788_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162788_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g17870.1 (Oryza sativa), 3'ss of exon 3
ggcacaagtttatgacgtgatctagtgagcattatgctactcagagtacaaaataacaagtagatttactttttaacatgtataatggtgctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGATCCGGCTTCCGCAGACGGATTTACTGTCATATTCAACAAAGCCAGAGATG
                                                           ||||||  ||  |||||  || || ||||| | ||  | |||||||| |||| ||||||||||| |||||||||||||||||||||||||| || || ||||| || ||||| || || ||||||||||||||||||||||
-----------------------------------------------------------gtagatacaccctttaatgtggatcatggttccttt-ctagGAGGAAGCAGGTCGTCCCTTGCCCAAGTTTGGTGAATGGGATGTCAACGACCCAGCGTCCGCTGATGGATTCACAGTGATATTCAACAAAGCCAGAGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7844621|gb|AW787843.1|AW787843
EST:     AGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: AGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|71305295|gb|DR788781.1|DR788781
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|9953936|gb|BE640519.1|BE640519
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTTTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232825|gb|FL102170.1|FL102170
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|6827794|gb|AW331437.1|AW331437
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211422150|gb|FL102204.1|FL102204
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|33771037|gb|CF273331.1|CF273331
EST:     CCAGCAACCAGCAGATCGGGACCTCTGCTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGNCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232831|gb|FL102176.1|FL102176
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232836|gb|FL102181.1|FL102181
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211419545|gb|FL102186.1|FL102186
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232832|gb|FL102177.1|FL102177
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|6952324|gb|AW424392.1|AW424392
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|18162475|gb|BM332314.1|BM332314
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211419547|gb|FL102188.1|FL102188
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211228705|gb|FL102149.1|FL102149
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|37375768|gb|CF624348.1|CF624348
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211230760|gb|FL102152.1|FL102152
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|32867621|gb|CF007303.1|CF007303
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|56462103|gb|CK986401.1|CK986401
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211419551|gb|FL102192.1|FL102192
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|28566626|gb|CB278274.1|CB278274
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211230763|gb|FL102155.1|FL102155
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232824|gb|FL102169.1|FL102169
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211230769|gb|FL102161.1|FL102161
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211419541|gb|FL102182.1|FL102182
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232834|gb|FL102179.1|FL102179
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211230770|gb|FL102162.1|FL102162
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|40333907|gb|CK367977.1|CK367977
EST:     GACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: GACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211419546|gb|FL102187.1|FL102187
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211419543|gb|FL102184.1|FL102184
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232835|gb|FL102180.1|FL102180
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGATGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|18173726|gb|BM349114.1|BM349114
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211419553|gb|FL102194.1|FL102194
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211230772|gb|FL102164.1|FL102164
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232828|gb|FL102173.1|FL102173
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|32919769|gb|CF024581.1|CF024581
EST:     CCAGCAACCAGCAGATCGGGACCTCCGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211422144|gb|FL102198.1|FL102198
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|18169269|gb|BM339109.1|BM339109
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211419554|gb|FL102195.1|FL102195
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232822|gb|FL102167.1|FL102167
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211422146|gb|FL102200.1|FL102200
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211230771|gb|FL102163.1|FL102163
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|28982510|gb|BQ538207.2|BQ538207
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|84977548|gb|DW475970.1|DW475970
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211419548|gb|FL102189.1|FL102189
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232833|gb|FL102178.1|FL102178
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211422143|gb|FL102197.1|FL102197
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232830|gb|FL102175.1|FL102175
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|60348117|gb|DN215090.1|DN215090
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|18176627|gb|BM351560.1|BM351560
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211419542|gb|FL102183.1|FL102183
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|37622055|gb|CF675108.1|CF675108
EST:     AGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: AGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211230768|gb|FL102160.1|FL102160
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAAGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211422151|gb|FL102205.1|FL102205
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211230761|gb|FL102153.1|FL102153
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211422149|gb|FL102203.1|FL102203
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GA-GAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211422147|gb|FL102201.1|FL102201
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232823|gb|FL102168.1|FL102168
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|6166615|gb|AW144879.1|AW144879
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGGATGTCAACGA
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGG-ATGTCAACGA
EST: gi|211230774|gb|FL102166.1|FL102166
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|95107745|gb|EB739974.1|EB739974
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|6195036|gb|AW147140.1|AW147140
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211419549|gb|FL102190.1|FL102190
EST:     CCAACAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211419550|gb|FL102191.1|FL102191
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211228706|gb|FL102150.1|FL102150
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211422145|gb|FL102199.1|FL102199
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|16925243|gb|BM078311.1|BM078311
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211230765|gb|FL102157.1|FL102157
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|211232826|gb|FL102171.1|FL102171
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|37390596|gb|CF632530.1|CF632530
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
EST: gi|18169599|gb|BM339439.1|BM339439
EST:     CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCG                         GAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT
genomic: CCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 216

CACCCGCAACCGCAGGGAGAGAAAGGGGAAGCCCGCCGCCGCCCCGGCCCCCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGATCCGGCTTCCGCAGACGGATTTACTGTCATATTCAACAAAGCCAGAGATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 381

CACCCGCAACCGCAGGGAGAGAAAGGGGAAGCCCGCCGCCGCCCCGGCCCCCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGATCCGGCTTCCGCAGACGGATTTACTGTCATATTCAACAAAGCCAGAGATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 259

CACCCGCAACCGCAGGGAGAGAAAGGGGAAGCCCGCCGCCGCCCCGGCCCCCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGATCCGGCTTCCGCAGACGGATTTACTGTCATATTCAACAAAGCCAGAGATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 338

CACCCGCAACCGCAGGGAGAGAAAGGGGAAGCCCGCCGCCGCCCCGGCCCCCAGCAACCAGCAGATCGGGACCTCTGTTCTGCGCAATCCATCCATGGCGgtacgtgcaa ... ctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGATCCGGCTTCCGCAGACGGATTTACTGTCATATTCAACAAAGCCAGAGATG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacaaaataacaagtagatttactttttaacatgtataatggtgctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGATCCGGCTTCCGCAGACGGATTTACTGTCATATTCAACAAAGCCAGAGATG
                         ttttaac  putative branch site (score: 338)
                  atttactttttaacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggcacaagtttatgacgtgatctagtgagcattatgctactcagagtacaaaataacaagtagatttactttttaacatgtataatggtgctttaaccagGAGGAATCAGGCCGTCCCTTGCCAAAGTTTGGTGAATGGGATGTCAACGATCCGGCTTCCGCAGACGGATTTACTGTCATATTCAACAAAGCCAGAGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
-gcacaag
- - - - - - - - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtat