Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76012275|gb|DT939445.1|DT939445EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|211145859|gb|FL276332.1|FL276332EST: ACGCCGGCGCCCGCGACCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71441475|gb|DR822525.1|DR822525EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71763570|gb|DR961507.1|DR961507EST: AGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: AGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|74233460|gb|DT641374.1|DT641374EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|76021737|gb|DT948907.1|DT948907EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGA
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCA-GGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGA
EST:
gi|71767541|gb|DR965478.1|DR965478EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|148946737|gb|EC892003.2|EC892003EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|74239028|gb|DT646942.1|DT646942EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71449305|gb|DR830355.1|DR830355EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|76017754|gb|DT944924.1|DT944924EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|76021738|gb|DT948908.1|DT948908EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71767996|gb|DR965933.1|DR965933EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|50338467|gb|CO533593.1|CO533593EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71419569|gb|DR804817.1|DR804817EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|76917565|gb|DV166891.1|DV166891EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71764106|gb|DR962043.1|DR962043EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|78084204|gb|DV512597.1|DV512597EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71427305|gb|DR808355.1|DR808355EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|76017753|gb|DT944923.1|DT944923EST: CGGCACGCTCAAG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: CGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|78119738|gb|DV538122.1|DV538122EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|76013135|gb|DT940305.1|DT940305EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71326608|gb|DR799960.1|DR799960EST: CGCCGGCGCCCGCGCCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGGTGCTCTGCCCGG-TGTACAACAAGAAGAACGAGTGGG
genomic: CGCCGGCGCCCGCGCCC-GCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGG-TGCTCTGCC-GGCTGTACAACAAGAAGAACGAGTGGG
EST:
gi|71767995|gb|DR965932.1|DR965932EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71317793|gb|DR795659.1|DR795659EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCCGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTAC
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTAC
EST:
gi|71768239|gb|DR966176.1|DR966176EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71326606|gb|DR799959.1|DR799959EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|78111829|gb|DV530226.1|DV530226EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|76917564|gb|DV166890.1|DV166890EST: CCGGCACCGGCACGCTCAGG TTGGAGGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: CCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71768240|gb|DR966177.1|DR966177EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71760447|gb|DR958384.1|DR958384EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|148990362|gb|EE031926.2|EE031926EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71445054|gb|DR826104.1|DR826104EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|148946738|gb|EC892004.2|EC892004EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|71764432|gb|DR962369.1|DR962369EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|74234187|gb|DT642101.1|DT642101EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST:
gi|78111615|gb|DV530012.1|DV530012EST: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
36 (upstream exon),
14 (downstream exon)
Score:
1GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGACGCAGCAGCAGCAGGAGAAGAAGCAGAATCAGAAGCAAATGGAGT
Block sizes:
48 (upstream exon),
33 (downstream exon)
Score:
11GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGACGCAGCAGCAGCAGGAGAAGAAGCAGAATCAGAAGCAAATGGAGT
Block sizes:
46 (upstream exon),
39 (downstream exon)
Score:
5GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGACGCAGCAGCAGCAGGAGAAGAAGCAGAATCAGAAGCAAATGGAGT
Block sizes:
45 (upstream exon),
28 (downstream exon)
Score:
6GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGACGCAGCAGCAGCAGGAGAAGAAGCAGAATCAGAAGCAAATGGAGT