1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gttggattaatgatctgtttcatggcaagtgtatcattcaatttatgttgtcaaaggttccttgttgtcacaaacgtgaatgccttttctctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGCATTGGACACTGGAGGAACGTTGTGTTGGTGGTAACTGAGGTTTGTGCT
species | Zea mays |
transcript | GRMZM2G162409_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAGEST: gi|211107813|gb|FK992460.1|FK992460
genomic: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGC----G-GAGgtgaggtcag ... ctaatt
EST: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAG ACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGEST: gi|211107812|gb|FK992459.1|FK992459
genomic: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGgtgaggtcag ... ctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
EST: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAG ACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGEST: gi|211106909|gb|FK992456.1|FK992456
genomic: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGgtgaggtcag ... ctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
EST: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAGEST: gi|211107811|gb|FK992458.1|FK992458
genomic: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGC----G-GAGgtgaggtcag ... ctaatt
EST: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAG ACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGEST: gi|149082534|gb|EE171729.2|EE171729
genomic: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGgtgaggtcag ... ctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
EST: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAG ACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGEST: gi|74238708|gb|DT646622.1|DT646622
genomic: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGgtgaggtcag ... ctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
EST: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAG
genomic: TTCCTCTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGC----G-GAGgtgaggtcag ... ctaatt
tgttgtcaaaggttccttgttgtcacaaacgtgaatgccttttctctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGCATTGGACACTGGAGGAACGTTGTGTTGGTGGTAACTGAGGTTTGTGCT
ctctaat putative branch site (score: 41)
ccttttctctaatt CT-rich tract
tctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggattaatgatctgtttcatggcaagtgtatcattcaatttatgttgtcaaaggttccttgttgtcacaaacgtgaatgccttttctctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGCATTGGACACTGGAGGAACGTTGTGTTGGTGGTAACTGAGGTTTGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - -tgtttca
- - - - - - - - - - - - gcaagtg
- - - - - - - - - - - - - - - - - cattcaa
- - - - - - - - - - - - - - - - - - - - - - atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaac