1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttggattaatgatctgtttcatggcaagtgtatcattcaatttatgttgtcaaaggttccttgttgtcacaaacgtgaatgccttttctctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGCATTGGACACTGGAGGAACGTTGTGTTGGTGGTAACTGAGGTTTGTGCT
species | Zea mays |
transcript | GRMZM2G162409_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGC----G-GAG ACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGEST: gi|211106909|gb|FK992456.1|FK992456
genomic: CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAGgtcagccctc ... ctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
EST: CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAG ACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGEST: gi|74238708|gb|DT646622.1|DT646622
genomic: CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAGgtcagccctc ... ctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
EST: CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAG ACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGEST: gi|71426492|gb|DR807542.1|DR807542
genomic: CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAGgtcagccctc ... ctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
EST: CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAG ACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
genomic: CTTCCTCGACATCGCCGATCCCGCCACGCGCTGCCCGCAGCGGAGGTGAGgtcagccctc ... ctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGG
tgttgtcaaaggttccttgttgtcacaaacgtgaatgccttttctctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGCATTGGACACTGGAGGAACGTTGTGTTGGTGGTAACTGAGGTTTGTGCT
ctctaat putative branch site (score: 3)
ccttttctctaatt CT-rich tract
tctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggattaatgatctgtttcatggcaagtgtatcattcaatttatgttgtcaaaggttccttgttgtcacaaacgtgaatgccttttctctaattgcagACACAATAATCTTAGGTGAGGAGCATAGTTCAAAAGTCAAGATAGAAAGGGCATTGGACACTGGAGGAACGTTGTGTTGGTGGTAACTGAGGTTTGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG