1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taataatgtggcgtaatatgtctgattgtgttattatttctctgtatggtactgaaccctgatgatcctaaacgtgtgcatctgactcgtgtttcctcagGGGCATCGAGTGAGGACGAGGCACGGCCCTCTATCGGTTTCTGTATACGGAGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATTTAGCCTTGAATC
species | Zea mays |
transcript | GRMZM2G161787_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAGCGACTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTTGGCGGCAAG GGGCATCGAGTGAGGACGAGGCACGGCCCTCTATCGGTTTCTGTATACGGAEST: gi|50339480|gb|CO534606.1|CO534606
genomic: CCAGCGACTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTTGGCGGCAAGgtccgtgcgc ... gtttcctcagGGGCATCGAGTGAGGACGAGGCACGGCCCTCTATCGGTTTCTGTATACGGA
EST: CCAGCGACTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTTGGCGGCAAG GGGCATCGAGTGAGGACGAGGCACGGCCCTCTATCGGTTTCTGTATACGGAEST: gi|148964676|gb|EC905957.2|EC905957
genomic: CCAGCGACTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTTGGCGGCAAGgtccgtgcgc ... gtttcctcagGGGCATCGAGTGAGGACGAGGCACGGCCCTCTATCGGTTTCTGTATACGGA
EST: CCAGCGACTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTTGGCGGCAAG GGGCATCGAGTGAGGACGAGGCACGGCCCTCTATCGGTTTCTGTATACGGAEST: gi|50328528|gb|CO523654.1|CO523654
genomic: CCAGCGACTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTTGGCGGCAAGgtccgtgcgc ... gtttcctcagGGGCATCGAGTGAGGACGAGGCACGGCCCTCTATCGGTTTCTGTATACGGA
EST: CCAGCGACTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTTGGCGGCAAG GGGCATCGAGTGAGGACGAGGCACGGCCCTCTATCGGTTTCTGTATACGGA
genomic: CCAGCGACTCCGTGTCGGTCGACGTCGAGCGGATCTTCTTTGGCGGCAAGgtccgtgcgc ... gtttcctcagGGGCATCGAGTGAGGACGAGGCACGGCCCTCTATCGGTTTCTGTATACGGA
atggtactgaaccctgatgatcctaaacgtgtgcatctgactcgtgtttcctcagGGGCATCGAGTGAGGACGAGGCACGGCCCTCTATCGGTTTCTGTATACGGAGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATTTAGCCTTGAATC
tgtttcctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taataatgtggcgtaatatgtctgattgtgttattatttctctgtatggtactgaaccctgatgatcctaaacgtgtgcatctgactcgtgtttcctcagGGGCATCGAGTGAGGACGAGGCACGGCCCTCTATCGGTTTCTGTATACGGAGACGAGGACAAGCCCGCGCTCGTAACTTATCCGGATTTAGCCTTGAATC
- - - - - - - - - - -ctgattg
- - - - - - - - - - - - - - - - - - - - - - - -ggtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatctg