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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaaagcttcaatttttgttctctcatttgacatgtttgtttgtttcatcatgataagaaaatgatcctcaactccggctaattcatatcttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAGTACTGCTAATCGCTACCAACACATCAAGTCAACTAAGCCTGTTGTAG

Basic information

species Zea mays
transcript GRMZM2G161728_T04
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74234877|gb|DT642791.1|DT642791
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211285005|gb|FL330934.1|FL330934
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|148970443|gb|EE021294.2|EE021294
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|148982152|gb|EE028182.2|EE028182
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211110591|gb|FL338760.1|FL338760
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211369326|gb|FL186711.1|FL186711
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211029006|gb|FL358137.1|FL358137
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTATCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211369327|gb|FL186712.1|FL186712
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211531455|gb|FL327595.1|FL327595
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211381172|gb|FL350978.1|FL350978
EST:     GGAGCCGCC-G-GGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211255468|gb|FL340105.1|FL340105
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|78079893|gb|DV508305.1|DV508305
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211230929|gb|FL338421.1|FL338421
EST:     GGAGCCGCCGGCGNTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211342585|gb|FL343867.1|FL343867
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211005122|gb|FL358937.1|FL358937
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|94474289|gb|EB703247.1|EB703247
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211437933|gb|FL338199.1|FL338199
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211531838|gb|FL338634.1|FL338634
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211517505|gb|FL351634.1|FL351634
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211467079|gb|FL315616.1|FL315616
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211268265|gb|FL364919.1|FL364919
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|13558576|gb|BG549932.1|BG549932
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211409281|gb|FL329226.1|FL329226
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAA-GATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211430763|gb|FL360603.1|FL360603
EST:     GGAGCCGCCGG-GTTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211369324|gb|FL186709.1|FL186709
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|91050811|gb|EB161229.1|EB161229
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|149008427|gb|EE040587.2|EE040587
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|71327521|gb|DR800373.1|DR800373
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211006794|gb|FL317953.1|FL317953
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211354852|gb|FL354351.1|FL354351
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211291944|gb|FL367895.1|FL367895
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211118991|gb|FL350362.1|FL350362
EST:     GGAGCCGCCGGCGCTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211279546|gb|FL328174.1|FL328174
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|76287384|gb|DV026952.1|DV026952
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211375633|gb|FL110751.1|FL110751
EST:     GGAGCCGCCGGCGTTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211284991|gb|FL330460.1|FL330460
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCTAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211500673|gb|FL332349.1|FL332349
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211510664|gb|FL361518.1|FL361518
EST:     GGAGCCGCCGG-GTTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCACAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
EST: gi|211094177|gb|FL353110.1|FL353110
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTGATCCAAAGTTGCGCCGCAAAGATGA
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTT-ATCCAAAGTTGCGCCGCAAAGATGA
EST: gi|211286672|gb|FL320843.1|FL320843
EST:     GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAG                         GTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG
genomic: GGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 16 (upstream exon), 34 (downstream exon)
Score: 2

CGACGAAGCCGGGGGGCGATCGCTCCAGCGCCGCCGGCGACCTCGCCCCGGGAGCCGCCGGCGGTACCCCGCTCTCTGTCCCGCCTCAACGAACCCTCAGgttgggttgt ... ttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAGTACTGCTAATCGCTACCAACACATCAAGTCAACTAAGCCTGTTGTAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcatgataagaaaatgatcctcaactccggctaattcatatcttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAGTACTGCTAATCGCTACCAACACATCAAGTCAACTAAGCCTGTTGTAG
                               ggctaat  putative branch site (score: 2)
                                           tcttgtct  putative PPT
        ataagaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaaaagcttcaatttttgttctctcatttgacatgtttgtttgtttcatcatgataagaaaatgatcctcaactccggctaattcatatcttgtctgcagGTCCAAGTAGTTCGTTTCGTGAGTTATCCAAAGTTGCGCCGCAAAGATGAGTACTGCTAATCGCTACCAACACATCAAGTCAACTAAGCCTGTTGTAG

- - agcttca
- - - - - - -ttttgtt
- - - - - - - - - - - -tcatttg
- - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatat