1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ataatccaagtcacttaattattgtcatgcttctgttcctctatatcaccatgaatattaggtagctttctaatattttaaattatgttggaacttccagACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAG
species | Zea mays |
transcript | GRMZM2G161299_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCAAGACCGCTGTCGCGCCGCTCGAGCGCGTCAAGATCCTGTTCCAG ACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACAEST: gi|211359789|gb|FL457496.1|FL457496
genomic: TCGCCAAGACCGCTGTCGCGCCGCTCGAGCGCGTCAAGATCCTGTTCCAGgtgcgttgca ... gaacttccagACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACA
EST: GACCGTTGTCGCGCCGCTCGAGCGCGTCAAGATCCTGTTCCAG ACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACAEST: gi|211538575|gb|FL022784.1|FL022784
genomic: GACCGCTGTCGCGCCGCTCGAGCGCGTCAAGATCCTGTTCCAGgtgcgttgca ... gaacttccagACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACA
EST: TCGCCAAGACCGCTGTCGCGCCGCTCGARCGCGTCAAGATCCTGTTCCAG ACAAGAAGAGCGGAATTCCATGGTTCTGGATTGATTGGATCCTTCCGAACAEST: gi|38687749|gb|CK144780.1|CK144780
genomic: TCGCCAAGACCGCTGTCGCGCCGCTCGAGCGCGTCAAGATCCTGTTCCAGgtgcgttgca ... gaacttccagACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACA
EST: TCGCCAAGACCGCTGTCGCGCCGCTCGAGCGCGTCAAGATCCTGTTCCAG ACAAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACEST: gi|211538580|gb|FL022789.1|FL022789
genomic: TCGCCAAGACCGCTGTCGCGCCGCTCGAGCGCGTCAAGATCCTGTTCCAGgtgcgttgca ... gaacttccagAC-AAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAAC
EST: TCGCCAAGACCGCTGTCGCGCCGCTCGAGCGCGTCAAGATCCTGTTCCAG ACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACA
genomic: TCGCCAAGACCGCTGTCGCGCCGCTCGAGCGCGTCAAGATCCTGTTCCAGgtgcgttgca ... gaacttccagACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACA
tcaccatgaatattaggtagctttctaatattttaaattatgttggaacttccagACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAG
ttctaat putative branch site (score: 31)
cttcc putative PPT
tagctttctaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatccaagtcacttaattattgtcatgcttctgttcctctatatcaccatgaatattaggtagctttctaatattttaaattatgttggaacttccagACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAG
- - - - - - - - - - - - - - gcttctg
- - - - - - - - - - - - - - - - - - - - - - - - ccatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgttg