1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcatttatgaaaaatatcgtgggtgctcggctgcatctgccgcaattcttggtcttgagcactgtgtatacatgtatttttgtttctttattgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGATATAAAGATTATTGCTTTGGCTTACATGTTAGAAGCTGAGATCCATGG
species | Zea mays |
transcript | GRMZM2G160996_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGEST: gi|89251870|gb|DY623656.1|DY623656
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGEST: gi|211459178|gb|FL298363.1|FL298363
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGEST: gi|211459181|gb|FL298366.1|FL298366
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGEST: gi|148959816|gb|EC905688.2|EC905688
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGEST: gi|26559222|gb|CA831457.1|CA831457
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGEST: gi|149015217|gb|EE045002.2|EE045002
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGEST: gi|22546382|gb|BU098693.1|BU098693
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGEST: gi|148957779|gb|EC903910.2|EC903910
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCCAAACGCCTTTCAGATGTEST: gi|91867714|gb|EB399765.1|EB399765
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCC-AAACGC-TTTCAGATGT
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGEST: gi|211459175|gb|FL298360.1|FL298360
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGEST: gi|71320125|gb|DR796817.1|DR796817
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGEST: gi|211459186|gb|FL298371.1|FL298371
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGT-GEST: gi|87157045|gb|DY401834.1|DY401834
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGEST: gi|211459183|gb|FL298368.1|FL298368
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
EST: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGATAAGAAAG TTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
genomic: CCCCGTTCCCGTTGAGACCGTTGAACCTGCGCCGGAGTTCGTTAAGAAAGgtcgctgctc ... ttgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTG
ttcttggtcttgagcactgtgtatacatgtatttttgtttctttattgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGATATAAAGATTATTGCTTTGGCTTACATGTTAGAAGCTGAGATCCATGG
tttttgtttctttatt CT-rich tract
atgtatttttgtttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttatgaaaaatatcgtgggtgctcggctgcatctgccgcaattcttggtcttgagcactgtgtatacatgtatttttgtttctttattgcttgcagTTACCAAGTTTGCCAGGGAGACAGGAGACATCCAAACGCTTTCAGATGTTGATATAAAGATTATTGCTTTGGCTTACATGTTAGAAGCTGAGATCCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - -aaaaata
- - - - - - - - - - gggtgct
- - - - - - - - - - - - - -cggctgc
- - - - - - - - - - - - - - - - - - ctgccgc
- - - - - - - - - - - - - - - - - - - - - - attcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacatg