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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttactgccattcacatttttattgttcatagtaaatagtcttgaggggacagctatgataaaatatcctctatttcattccagCTCTGTAAAGAAGGATGAAGCTCATACCACTGTTCAGTTTCAACAATGCATCAAGATCCTGGCGGACAAAGTTTATTTACTGACACGACAGAGTGCTGAG

Basic information

species Zea mays
transcript GRMZM2G160404_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160404_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g08350.1 (Oryza sativa), 3'ss of exon 3
-----gtgtgttactgccattcacatttttattgttca-tagtaaatagtc-ttgaggggacagctatgataa--aatatcctctatttcattccagCTCTGTAAAGAAGGATGAAGCTCATACCACTGTTCAGTTTCAACAATGCATCAAGATCCTGGCGGACAAAGTTTATTTACTGACACGACAGAGTGCTGAG---
       || |||      |   | |||  ||     | |  |  | |||  | ||     ||| | |  |     |      || ||| |||  | |  || |||||||||||||| | |||| ||  |||||||||| |||||||||||||||||||| |||||||||  ||| ||  |||||||||||||||||   
tataaaagtattagcattttcttcctttggatcccctactgctgtagagttatcgaaacagcagatttactggctgagtaatacttttttattgaaacagTGCAAAGAAGGATGAAGGTGATACAACCATTCAGTTTCAGCAATGCATCAAGATCCTGGCAGACAAAGTTGGTTTTCTATCACGACAGAGTGCTGAGCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtaaatagtcttgaggggacagctatgataaaatatcctctatttcattccagCTCTGTAAAGAAGGATGAAGCTCATACCACTGTTCAGTTTCAACAATGCATCAAGATCCTGGCGGACAAAGTTTATTTACTGACACGACAGAGTGCTGAG
                                     tcctctatttcattcc  CT-rich tract
                         tatgataaaatat  TA-rich tract