1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtgagggctttcagatgtttgatttaattggagaaattgatatgatttgtaaggttgtgagtgttttcttctttcggacgtgctgtcttctttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGACAAGCTCCAAGATACAACAGCTTCAGGAGGCATTCGCTGAGCTTGAGAG
species | Zea mays |
transcript | GRMZM2G160316_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|78106644|gb|DV525062.1|DV525062
genomic: CAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: CAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|32850992|gb|CD990673.1|CD990673
genomic: CAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAAEST: gi|9733695|gb|BE512447.1|BE512447
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|6626308|gb|AW257840.1|AW257840
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|32850990|gb|CD990671.1|CD990671
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|211363317|gb|FL163078.1|FL163078
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|5555318|gb|AI881269.1|AI881269
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|91877793|gb|EB407750.1|EB407750
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: CAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|31997958|gb|CD661849.1|CD661849
genomic: CAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|211365960|gb|FL163084.1|FL163084
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|211363315|gb|FL163076.1|FL163076
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|9794649|gb|BE552957.1|BE552957
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGTAGTCTGTCGCGGCTCTTATGGACTCGEST: gi|78082750|gb|DV511143.1|DV511143
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGG-AGTCTGTCGCGGCTCTTATGGACTCG
EST: CAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|211363320|gb|FL163081.1|FL163081
genomic: CAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|76282459|gb|DV022027.1|DV022027
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: CAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|211365961|gb|FL163085.1|FL163085
genomic: CAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|211363319|gb|FL163080.1|FL163080
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|211365959|gb|FL163083.1|FL163083
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGAEST: gi|211363316|gb|FL163077.1|FL163077
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
EST: GAGGACGGGGGCCAGCAGCGGCSGGCAGCGCCTGCCCGTCTTGTTATAGG GAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
genomic: GAGGACGGGGGCCAGCAGCGGCCGCCAGCGCCTGCCCGTCTTGTTATAGGgtgagtgccc ... tttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGA
tttgtaaggttgtgagtgttttcttctttcggacgtgctgtcttctttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGACAAGCTCCAAGATACAACAGCTTCAGGAGGCATTCGCTGAGCTTGAGAG
tgctgtcttctttctt CT-rich tract
ttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagggctttcagatgtttgatttaattggagaaattgatatgatttgtaaggttgtgagtgttttcttctttcggacgtgctgtcttctttcttgcagGAGCGTTCGCCATGTCTGAAATGGAGTCTGTCGCGGCTCTTATGGACTCGACAAGCTCCAAGATACAACAGCTTCAGGAGGCATTCGCTGAGCTTGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - atgtttg
- - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtc