1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...caccatgcagatccttgcaagaccactaggttttaaatgacctactggcagcctctgttcttgttttaaatgtgacaattcatgtttgcacttgatgcagGTCGAGGAGGAATTGGAGCGTGCCAGGGTGGCAATCACGGATAGTGATGTGGCTTCGTTTCTTCCCAGCAAGCGGAATG
species | Zea mays |
transcript | GRMZM2G159142_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGATCCCTCCACGCTCGACAAG GTCGAGGAGGAATTGGAGCGTGCCAGGGTGGCAATCACGGATAGTGATGTGEST: gi|78180105|gb|DV550478.1|DV550478
genomic: CGATCCCTCCACGCTCGACAAGgtcctcctcg ... cttgatgcagGTCGAGGAGGAATTGGAGCGTGCCAGGGTGGCAATCACGGATAGTGATGTG
EST: GCCGCCTCCAGGCCTCGCTCCACGCCCTCGATCCCTCCACGCTCGACAAG GTCGAGGAGGAATTGGAGCGTGCCAGGGTGGCAATCACGGATAGTGATGTGEST: gi|7844220|gb|AW787442.1|AW787442
genomic: GCCGCCTCCAGGCCTCGCTCCACGCCCTCGATCCCTCCACGCTCGACAAGgtcctcctcg ... cttgatgcagGTCGAGGAGGAATTGGAGCGTGCCAGGGTGGCAATCACGGATAGTGATGTG
EST: TCCACGCCCTCGATCCCTCCACGCTCGACAAG GTCGAGGAGGAATTGGAGCGTGCCAGGGTGGCAATCACGGATAGTGATGTGEST: gi|12046841|gb|BF728980.1|BF728980
genomic: TCCACGCCCTCGATCCCTCCACGCTCGACAAGgtcctcctcg ... cttgatgcagGTCGAGGAGGAATTGGAGCGTGCCAGGGTGGCAATCACGGATAGTGATGTG
EST: ACGCCCTCGATCCCTCCACGCTCGACAAG GTCGAGGAGGAATTGGAGCGTGCCAGGGTGGCAATCACGGATAGTGATGTG
genomic: ACGCCCTCGATCCCTCCACGCTCGACAAGgtcctcctcg ... cttgatgcagGTCGAGGAGGAATTGGAGCGTGCCAGGGTGGCAATCACGGATAGTGATGTG
tggcagcctctgttcttgttttaaatgtgacaattcatgtttgcacttgatgcagGTCGAGGAGGAATTGGAGCGTGCCAGGGTGGCAATCACGGATAGTGATGTGGCTTCGTTTCTTCCCAGCAAGCGGAATG
acttgat putative branch site (score: 71)
ttcttgttttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccatgcagatccttgcaagaccactaggttttaaatgacctactggcagcctctgttcttgttttaaatgtgacaattcatgtttgcacttgatgcagGTCGAGGAGGAATTGGAGCGTGCCAGGGTGGCAATCACGGATAGTGATGTGGCTTCGTTTCTTCCCAGCAAGCGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- ccatgca
- - - - - -tccttgc
- - - - - - - - - - - - - - - - - - - - cctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc