Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaattatatttatatttgggttattatttgaatttgggattgagagatggggggttattctccttttcttttctctttttgggactggattatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAGGACACGAATGATGATGGAATCGAATCCCTACTTCGCAGTGAACGCAGGG

Basic information

species Zea mays
transcript GRMZM2G159028_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159028_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g03890.1 (Oryza sativa), 3'ss of exon 1
acaattatatttatatttgggttatt--atttgaatttgggattgagagatggggggttattctcc------ttttcttttctctttttgggact--ggattatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAGGACACGAATGATGATGGAATCGAATCCCTACTTCGCAGTGAACGCAGGG---
          |||| |||||||||||  || |||| | |||||||||||||| |||| |  |||||      |||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    ||||| ||||| ||||||||||||| ||||||    
----------ttatgtttgggttattttatatgaaatggggattgagagatgaggggatcgtctccttttttttttcttttctctttttgggactctggattatctgaagGGCAATGATGGGAGGCGGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAGGCCACGAATGATC---GAATCCAATCCATACTTCGCAGTGACCGCAGGCAGT

upper sequence: GRMZM2G159028_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g03710.1 (Oryza sativa), 3'ss of exon 1
acaattatatttatatttgggttattatttgaatttgggattgagagatggggggttattctccttttcttttctctttttgggactggattatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAGGACACGAATGATGATGGAATCGAATCCCTACTTCGCAGTGAACGCAGGG-----------------------------------------------------------------------------------------
                                                                                      |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    ||||| ||||| ||||||||||||| ||||||                                                                                          
--------------------------------------------------------------------------------------tggattatctgaagggcaatgatgggaggcgggggggtttcggatgggtacgagggatcaaagaggccacgaatgatc---gaatccaatccatacttcgcagTGACCGCAGGCAGTCCCTTGGATGTCTCAAAGAGGGCCAGGATGATGGAACCAGCCCCTCCCTATTTCGGAGCCATGGGCAGCAGCGCTGCTGGTGGCAC

upper sequence: GRMZM2G159028_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv04s0044g00080.t01 (Vitis vinifera), 3'ss of exon 1
-acaattatatttatatttgggttattat---ttgaatttgggattgagagatggggggttattctccttttcttttctctttttgggactggattatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAG---GGATCAAAGAGGACACGAATGATGATGGAATCGAATCCCTACTTCGCAGTGAAC-GCAGGG
 | ||  | |||     |  ||  |   |   |||  |||||  ||   |      || | | |      || ||||    |||||||  ||||| || |||||||||||| ||||| || ||||||||||||| |||||||||   || ||||||||   || ||  ||||||||||| ||||||||||||||||||| | ||||  
aataaagacattaggtgtcaggaaaacgtgggttgggtttggttttattaa---caggttgagtgggggattttttttctgttttgggtatggataat-tgaagGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGATCGGCTCAAAGAG---ACAAAGAATGATGGAATCAAATCCCTACTTCGCAGTGAGCAGCAGT-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148963323|gb|EE014317.2|EE014317
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|76281096|gb|DV020664.1|DV020664
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211177016|gb|FL216000.1|FL216000
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211177019|gb|FL216003.1|FL216003
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|74243613|gb|DT651527.1|DT651527
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211175336|gb|FL215986.1|FL215986
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211173665|gb|FL215978.1|FL215978
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|67024761|gb|CO453510.1|CO453510
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|50323658|gb|CO518784.1|CO518784
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211173657|gb|FL215970.1|FL215970
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211175337|gb|FL215987.1|FL215987
EST:     AGCTGCTCAGATCTCNNCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|32808033|gb|CD960267.1|CD960267
EST:     GATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: GATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|71438995|gb|DR820045.1|DR820045
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|101395199|gb|EB819529.1|EB819529
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211175343|gb|FL215993.1|FL215993
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|78087671|gb|DV516064.1|DV516064
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211175334|gb|FL215984.1|FL215984
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211173663|gb|FL215976.1|FL215976
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|76282303|gb|DV021871.1|DV021871
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211173662|gb|FL215975.1|FL215975
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|71333295|gb|DR803702.1|DR803702
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211175340|gb|FL215990.1|FL215990
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211177018|gb|FL216002.1|FL216002
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211173659|gb|FL215972.1|FL215972
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|88758099|gb|DY542240.1|DY542240
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211175348|gb|FL215998.1|FL215998
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211173667|gb|FL215980.1|FL215980
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|93281527|gb|EB673791.1|EB673791
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|71775326|gb|DR973204.1|DR973204
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|32825218|gb|CD964940.1|CD964940
EST:     GATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: GATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|71300816|gb|DR786438.1|DR786438
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|32807691|gb|CD959925.1|CD959925
EST:     GATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAAAG
genomic: GATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|9254157|gb|BE344625.1|BE344625
EST:     GGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: GGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211173661|gb|FL215974.1|FL215974
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211175344|gb|FL215994.1|FL215994
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATSATGGGAGGCTCGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211175342|gb|FL215992.1|FL215992
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211175335|gb|FL215985.1|FL215985
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATNGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211173664|gb|FL215977.1|FL215977
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|22489572|gb|BU049495.1|BU049495
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211173668|gb|FL215981.1|FL215981
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|76286214|gb|DV025782.1|DV025782
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211175345|gb|FL215995.1|FL215995
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|71434155|gb|DR815205.1|DR815205
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211173656|gb|FL215969.1|FL215969
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|87152127|gb|DY396916.1|DY396916
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|116827743|gb|EC871677.1|EC871677
EST:     AGCTGCTCAGAT-TC-TCGGGCCCCTTCGCCGGCGACCATCACCTGTTA-                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATTGGTACGACGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211175339|gb|FL215989.1|FL215989
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|9028628|gb|BE238668.1|BE238668
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211177015|gb|FL215999.1|FL215999
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|17970065|gb|BM276832.1|BM276832
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGACGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGA
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGA-GGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGA
EST: gi|211173660|gb|FL215973.1|FL215973
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211175346|gb|FL215996.1|FL215996
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
EST: gi|211173669|gb|FL215982.1|FL215982
EST:     AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAG                         GGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG
genomic: AGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 180

CCGCGTGCGCTCCCTTTCGTGGCACGACTGGGCGACCGCCGCTGTACGCCAGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAGGACACGAATGATGATGGAATCGAATCCCTACTTCGCAGTGAACGCAGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 57

CCGCGTGCGCTCCCTTTCGTGGCACGACTGGGCGACCGCCGCTGTACGCCAGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAGGACACGAATGATGATGGAATCGAATCCCTACTTCGCAGTGAACGCAGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 45

CCGCGTGCGCTCCCTTTCGTGGCACGACTGGGCGACCGCCGCTGTACGCCAGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAGGACACGAATGATGATGGAATCGAATCCCTACTTCGCAGTGAACGCAGGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 100

CCGCGTGCGCTCCCTTTCGTGGCACGACTGGGCGACCGCCGCTGTACGCCAGCTGCTCAGATCTCGTCGGGCCCCTTCGCCGGCGACCATCACCTGTTAGgtatgtggca ... ttatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAGGACACGAATGATGATGGAATCGAATCCCTACTTCGCAGTGAACGCAGGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatggggggttattctccttttcttttctctttttgggactggattatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAGGACACGAATGATGATGGAATCGAATCCCTACTTCGCAGTGAACGCAGGG
                   ttttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acaattatatttatatttgggttattatttgaatttgggattgagagatggggggttattctccttttcttttctctttttgggactggattatctgaagGGCAATGATGGGAGGCTGGGGGGTTTCGGATGGGTACGAGGGATCAAAGAGGACACGAATGATGATGGAATCGAATCCCTACTTCGCAGTGAACGCAGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA