1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agcttgccatgtttatgcaaataactagctcatttcttctgaatcctatctgtagcgcgtttcactcctgacaatttctcatgttcactctactcttcagGAAGTCTAACGACGATAACAAAATGAAGCCACCAGTTCCGACTTCTAAACAGAGAGCTAGCATGGCAGATGGCCCATTTGTTGTTCTAGAAACAGCCTCG
species | Zea mays |
transcript | GRMZM2G158872_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCGATGATCTGATCCCTGGATTCGCGGGGAGCAGCCCGCCGAGGAGTAG GAAGTCTAACGACGEST: gi|149082037|gb|EE171210.2|EE171210
genomic: TTCGATGATCTGATCCCTGGATTCGCGGGGAGCAGCCCGCCGAGGAGTAGgtgagcaagc ... tactcttcagGAAGTCTAACGACG
EST: TTCGATGATCTGATCCCTGGATTCGCGGGGAGCAGCCCGCCGAGGAGTAG GAAGTCTAACGACGATAACAAAATGAAGCCACCAGTTCCGACTTCTAAACAEST: gi|148932139|gb|EC875561.2|EC875561
genomic: TTCGATGATCTGATCCCTGGATTCGCGGGGAGCAGCCCGCCGAGGAGTAGgtgagcaagc ... tactcttcagGAAGTCTAACGACGATAACAAAATGAAGCCACCAGTTCCGACTTCTAAACA
EST: TTCGATGATCTGATCCCTGGATTCGCGGGGAGCAGCCCGCCGAGGAGTAG GAAGTCTAACGACGATAACAAAATGAAGCCACCAGTTCCGACTTCTAAACAEST: gi|149106930|gb|EE188831.2|EE188831
genomic: TTCGATGATCTGATCCCTGGATTCGCGGGGAGCAGCCCGCCGAGGAGTAGgtgagcaagc ... tactcttcagGAAGTCTAACGACGATAACAAAATGAAGCCACCAGTTCCGACTTCTAAACA
EST: TTCGATGATCTGATCCCTGGATTCGCGGGGAGCAGCCCGCCGAGGAGTAG GAAGTCTAACGACGATAACAAAATGAAGCCACCAGTTCCGACTTCTAAACA
genomic: TTCGATGATCTGATCCCTGGATTCGCGGGGAGCAGCCCGCCGAGGAGTAGgtgagcaagc ... tactcttcagGAAGTCTAACGACGATAACAAAATGAAGCCACCAGTTCCGACTTCTAAACA
ctatctgtagcgcgtttcactcctgacaatttctcatgttcactctactcttcagGAAGTCTAACGACGATAACAAAATGAAGCCACCAGTTCCGACTTCTAAACAGAGAGCTAGCATGGCAGATGGCCCATTTGTTGTTCTAGAAACAGCCTCG
tcctgac putative branch site (score: 98)
ttcactctactcttc putative PPT
acaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttgccatgtttatgcaaataactagctcatttcttctgaatcctatctgtagcgcgtttcactcctgacaatttctcatgttcactctactcttcagGAAGTCTAACGACGATAACAAAATGAAGCCACCAGTTCCGACTTCTAAACAGAGAGCTAGCATGGCAGATGGCCCATTTGTTGTTCTAGAAACAGCCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
agcttgc
- - - - - - ttatgca
- - - - - - - - - - - - - - - - - - - ctgaatc
- - - - - - - - - - - - - - - - - - - - - - - - -ctgtagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc