1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tactatttccatctcatgtcacaaatttggcataaggaatgggtattggtggctactgactgtgtttgtttccacgtattatacatgtacaatggaacagTTGATAATAGTTTTGCATGAACTATTGGTGTTGGCTATCTAAAGGACAGAAAGGCAGACATGAGCAACAGATCCCGCTCCATGGGCTGAAACTGGGATTC
species | Zea mays |
transcript | GRMZM2G158584_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAGTACCTCGTGCAGGTGACCAAGTACCAGGCCGCACAGAACTGCAAG TTGATAATAGTTTTGCATGAACTATTGGTGTTGGCTATCTAAAGGACAGAAEST: gi|148949507|gb|EC894971.2|EC894971
genomic: AGCAGTACCTCGTGCAGGTGACCAAGTACCAGGCCGCACAGAACTGCAAGgtacgtatgc ... aatggaacagTTGATAATAGTTTTGCATGAACTATTGGTGTTGGCTATCTAAAGGACAGAA
EST: AGCAGTACCTCGTGCAGGTGACCAAGTACCAGGCCGCACAGAACTGCAAG TTGATAATAGTTTTGCATGAACTATTGGTGTTGGCTATCTAAAGGACAGAAEST: gi|149011824|gb|EE042427.2|EE042427
genomic: AGCAGTACCTCGTGCAGGTGACCAAGTACCAGGCCGCACAGAACTGCAAGgtacgtatgc ... aatggaacagTTGATAATAGTTTTGCATGAACTATTGGTGTTGGCTATCTAAAGGACAGAA
EST: AGCAGTACCTCGTGCAGGTGACCAAGTACCAGGCCGCACAGAACTGCAAG TTGATAATAGTTTTGCATGAACTATTGGTGTTGGCTATCTAAAGGACAGAA
genomic: AGCAGTACCTCGTGCAGGTGACCAAGTACCAGGCCGCACAGAACTGCAAGgtacgtatgc ... aatggaacagTTGATAATAGTTTTGCATGAACTATTGGTGTTGGCTATCTAAAGGACAGAA
ttggtggctactgactgtgtttgtttccacgtattatacatgtacaatggaacagTTGATAATAGTTTTGCATGAACTATTGGTGTTGGCTATCTAAAGGACAGAAAGGCAGACATGAGCAACAGATCCCGCTCCATGGGCTGAAACTGGGATTC
tactgac putative branch site (score: 11)
tattatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactatttccatctcatgtcacaaatttggcataaggaatgggtattggtggctactgactgtgtttgtttccacgtattatacatgtacaatggaacagTTGATAATAGTTTTGCATGAACTATTGGTGTTGGCTATCTAAAGGACAGAAAGGCAGACATGAGCAACAGATCCCGCTCCATGGGCTGAAACTGGGATTC
- - - - - - - catgtca
- - - - - - - - - - - - - - - - - - - - - - - - - -gctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacatg