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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcactcaattctggtttttttcctgtttttctgtgtaacctactgatttagtacctctttggcctgagattctgaaacatcttttggacttcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCATGAGTCTCCAGGCAGAAAAATGCTGCAAATCTGCAACTTTGGTACACCA

Basic information

species Zea mays
transcript GRMZM2G158304_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211130572|gb|FL330786.1|FL330786
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|14717725|gb|BI245375.1|BI245375
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|78543767|gb|DV621265.1|DV621265
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|211275563|gb|FL307665.1|FL307665
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTCTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCGATAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|26559065|gb|CA831300.1|CA831300
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|14646223|gb|BI180412.1|BI180412
EST:     CTGCCTCCTGGGGAGTTTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTTTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|21760035|gb|BQ635576.1|BQ635576
EST:     TGCCTCCTGGGGAGTCTTCGCCGGCACCGCTCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCT
genomic: TGCCTCCTGGGGAGTCTTCGCCGGCACCGC-CGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCT
EST: gi|211331417|gb|FL352424.1|FL352424
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|15053864|gb|BI359409.1|BI359409
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|18173060|gb|BM348448.1|BM348448
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCATTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|20301345|gb|BQ164288.1|BQ164288
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|9733818|gb|BE512570.1|BE512570
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTGCATAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|16920401|gb|BM074641.1|BM074641
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|211006699|gb|FL312884.1|FL312884
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|32870613|gb|CF010295.1|CF010295
EST:     GGCCTCTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: GGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|22520733|gb|BU079544.1|BU079544
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|18174519|gb|BM349907.1|BM349907
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|211210774|gb|FL332651.1|FL332651
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|22520732|gb|BU079543.1|BU079543
EST:     CTGCCTCCTGGGGAGTTTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTTTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|22552600|gb|BU102439.1|BU102439
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|211139795|gb|FL317674.1|FL317674
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|211535278|gb|FL465646.1|FL465646
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|211021442|gb|FL345710.1|FL345710
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|18171065|gb|BM340905.1|BM340905
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|26457616|gb|CA829199.1|CA829199
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|211530953|gb|FL309235.1|FL309235
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|5740187|gb|AI947877.1|AI947877
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|18173470|gb|BM348858.1|BM348858
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|28985893|gb|CB350868.1|CB350868
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|211043305|gb|FL320136.1|FL320136
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|18174460|gb|BM349848.1|BM349848
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|18168507|gb|BM338347.1|BM338347
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|18170102|gb|BM339942.1|BM339942
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCATTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|18166030|gb|BM335869.1|BM335869
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|18167042|gb|BM336881.1|BM336881
EST:     ATGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|28984735|gb|BQ539193.2|BQ539193
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
EST: gi|87155615|gb|DY400404.1|DY400404
EST:     CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAG                         CCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA
genomic: CTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 39 (downstream exon)
Score: 192

CCGCTTCGTCTCCCCCCGCAGCCGTCCCCAGTCCACTGACATCGTGGCCGCTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCATGAGTCTCCAGGCAGAAAAATGCTGCAAATCTGCAACTTTGGTACACCA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 241

CCGCTTCGTCTCCCCCCGCAGCCGTCCCCAGTCCACTGACATCGTGGCCGCTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCATGAGTCTCCAGGCAGAAAAATGCTGCAAATCTGCAACTTTGGTACACCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 162

CCGCTTCGTCTCCCCCCGCAGCCGTCCCCAGTCCACTGACATCGTGGCCGCTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCATGAGTCTCCAGGCAGAAAAATGCTGCAAATCTGCAACTTTGGTACACCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 238

CCGCTTCGTCTCCCCCCGCAGCCGTCCCCAGTCCACTGACATCGTGGCCGCTGCCTCCTGGGGAGTCTTCGCCGGCACCGCCGGCCTTTACCTCGTCCAGgtcaggatcc ... tcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCATGAGTCTCCAGGCAGAAAAATGCTGCAAATCTGCAACTTTGGTACACCA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttagtacctctttggcctgagattctgaaacatcttttggacttcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCATGAGTCTCCAGGCAGAAAAATGCTGCAAATCTGCAACTTTGGTACACCA
 tactgat  putative branch site (score: 238)
                                           cttcttttgc  putative PPT
                                 atctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcactcaattctggtttttttcctgtttttctgtgtaacctactgatttagtacctctttggcctgagattctgaaacatcttttggacttcttttgcagCCATTTGACTGGATTAAGAAGACTTTCTTCCAGAAACCTGAACCAGAGGCATGAGTCTCCAGGCAGAAAAATGCTGCAAATCTGCAACTTTGGTACACCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - ttctggt
- - - - - - - - - - - - - ttttctg
- - - - - - - - - - - - - - - - - - - cctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacatc