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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgagctaaaaaagccgaacaatttcctccaaatttcatactcctcatcgcctcatggttatggttcctctgtctcatttccccccctggaaatgcacagGCATTTGGTGCAGGAGGACGGCTACTGTGGCCACACGTCATGTCCTGTCGGATCTGAGCCTTCCGAATCTCTGCCCAGCGACGCCGGGTGCTCTGTTCCT

Basic information

species Zea mays
transcript GRMZM2G158281_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158281_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g06010.1 (Oryza sativa), 3'ss of exon 1
ctgagctaaaaaagccgaacaatttcctccaaatttcatactcctcatcgcctcatggttatggttcctctgtctcatttccccccctggaa-atgcacagGCATTTGGTGCAGGAGGACGGCTACTGTGGCCACACGTCATGTCCTGTCGGATCTGAGCCTTCCGAATCTCTGCCCAGCGACGCCGGGTGCTCTGTTCCT
 ||   ||  | |      |   ||| ||   ||||     | ||  |    | ||| || |  |   | |||      |  |  |||||   |||  ||| |||||||||  |||||||||||||||||||||| | ||||| |||| ||||||||| ||||| ||| ||||||| | ||||| ||| ||  ||| | ||
-tgtagtatgatacttcttcttcttcttcagtattttggtgttcttctttagtgatgatttttttgtttttgtggtgcatttcttcctggggcatgtgcagTCATTTGGTGTGGGAGGACGGCTACTGTGGCCACGCATCATGCCCTGCCGGATCTGATCCTTCTGAAGCTCTGCCTACCGACGTCGGCTGTGCTGCTGCT