1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctctctcgagtcttctcgtcatcttcatcattattcagcggataagcccatactagtctctgaattggagtcatctatcaatttgcttttgattctgcgccgcagCTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAAATTACCCCTTCCCTCGCGCGCCTAGTCATAAAGCAAGG
species | Zea mays |
transcript | GRMZM2G158228_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTCGGAGGCTCTCTTCATCCGGAAGGCAGGGGAAGAAATTACGCAGCAG CTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAAEST: gi|76918728|gb|DV167428.1|DV167428
genomic: AGTCGGAGGCTCTCTTCATCCGGAAGGCAGGGGAAGAAATTACGCAGCAGgtctctctcg ... tgcgccgcagCTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAA
EST: AGTCGGAGGCTCTCTTCATCCGGAAGGCAGGGGAAGAAATTACGCAGCAG CTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAAEST: gi|76927459|gb|DV171253.1|DV171253
genomic: AGTCGGAGGCTCTCTTCATCCGGAAGGCAGGGGAAGAAATTACGCAGCAGgtctctctcg ... tgcgccgcagCTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAA
EST: AGTCGGAGGCTCTCTTCATCCGGAAGGCAGGGGAAGAAATTACGCAGCAG CTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAAEST: gi|148985468|gb|EE029669.2|EE029669
genomic: AGTCGGAGGCTCTCTTCATCCGGAAGGCAGGGGAAGAAATTACGCAGCAGgtctctctcg ... tgcgccgcagCTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAA
EST: AGTCGGAGGCTCTCTTCATCCGGAAGGCAGGGGAAGAAATTACGCAGCAG CTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAAEST: gi|76910390|gb|DV163842.1|DV163842
genomic: AGTCGGAGGCTCTCTTCATCCGGAAGGCAGGGGAAGAAATTACGCAGCAGgtctctctcg ... tgcgccgcagCTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAA
EST: AGTCGGAGGCTCTCTTCATCCGGAAGGCAGGGGAAGAAATTACGCAGCAG CTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAA
genomic: AGTCGGAGGCTCTCTTCATCCGGAAGGCAGGGGAAGAAATTACGCAGCAGgtctctctcg ... tgcgccgcagCTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAA
tactagtctctgaattggagtcatctatcaatttgcttttgattctgcgccgcagCTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAAATTACCCCTTCCCTCGCGCGCCTAGTCATAAAGCAAGG
ttttgat putative branch site (score: 34)
tatcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctctcgagtcttctcgtcatcttcatcattattcagcggataagcccatactagtctctgaattggagtcatctatcaatttgcttttgattctgcgccgcagCTCTACAACTTCGAGGACAAAGGGGGTCGCCGTGTTGTTCTCAGGCCCGAAATTACCCCTTCCCTCGCGCGCCTAGTCATAAAGCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG