1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatagtttcatgttagcaaagcatgacctttgtggtattacttccgcatgcagctcctgtgaaaatatttgatctttatgtgtatctatctggtgcacagAGTTGAAATATATCCCCACAATAAAGAAGAAAGAATCGCAAGAACATGGGGTACAACTGCACCTGGTTTACCCTATGTTGATGAGGCTATTGCGTCAGCT
species | Zea mays |
transcript | GRMZM2G158147_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGTCGTCGCCATCCTGCGCAG AGTTGAAATATATCCCCACAATAAAGAAGAAAGAATCGCAAGAACATGGGGEST: gi|16919297|gb|BM074124.1|BM074124
genomic: GTGTCGTCGCCATCCTGCGCAGgtacgtacgt ... tggtgcacagAGTTGAAATATATCCCCACAATAAAGAAGAAAGAATCGCAAGAACATGGGG
EST: GACGTCGCGTTACAAGGGCCCGACGGCGGTGTCGTCGCCATCCTGCGCAG AGTTGAAATATATCCCCAC
genomic: GACGTCGCGTTACAAGGGCCCGACGGCGGTGTCGTCGCCATCCTGCGCAGgtacgtacgt ... tggtgcacagAGTTGAAATATATCCCCAC
gcatgcagctcctgtgaaaatatttgatctttatgtgtatctatctggtgcacagAGTTGAAATATATCCCCACAATAAAGAAGAAAGAATCGCAAGAACATGGGGTACAACTGCACCTGGTTTACCCTATGTTGATGAGGCTATTGCGTCAGCT
atttgat putative branch site (score: 37)
tctatct putative PPT
aaaatatttgatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatagtttcatgttagcaaagcatgacctttgtggtattacttccgcatgcagctcctgtgaaaatatttgatctttatgtgtatctatctggtgcacagAGTTGAAATATATCCCCACAATAAAGAAGAAAGAATCGCAAGAACATGGGGTACAACTGCACCTGGTTTACCCTATGTTGATGAGGCTATTGCGTCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - catgtta
- - - - - - - - - aagcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - gctcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtatc