1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgtttacttatattctgttcagtataatgtttgttcatcctgctacataattttgttctcaaaactaagtttgcttactctggcgatgatcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAGGTCAATGCACTTTTTGGATGGCCTAGGGGGGACACGACAGCACGTGAAC
species | Zea mays |
transcript | GRMZM2G158097_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAGEST: gi|89761707|gb|DY689615.1|DY689615
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAGEST: gi|148947538|gb|EC893010.2|EC893010
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAGEST: gi|71318422|gb|DR795977.1|DR795977
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAGEST: gi|76922721|gb|DV169140.1|DV169140
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
acataattttgttctcaaaactaagtttgcttactctggcgatgatcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAGGTCAATGCACTTTTTGGATGGCCTAGGGGGGACACGACAGCACGTGAAC
tgcttac putative branch site (score: 21)
attttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttacttatattctgttcagtataatgtttgttcatcctgctacataattttgttctcaaaactaagtttgcttactctggcgatgatcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAGGTCAATGCACTTTTTGGATGGCCTAGGGGGGACACGACAGCACGTGAAC
- - - - - - -ttctgtt
- - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - ctgctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac