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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtttacttatattctgttcagtataatgtttgttcatcctgctacataattttgttctcaaaactaagtttgcttactctggcgatgatcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAGGTCAATGCACTTTTTGGATGGCCTAGGGGGGACACGACAGCACGTGAAC

Basic information

species Zea mays
transcript GRMZM2G158097_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76922721|gb|DV169140.1|DV169140
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|89761707|gb|DY689615.1|DY689615
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|71766887|gb|DR964824.1|DR964824
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|78092697|gb|DV521071.1|DV521071
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|50325272|gb|CO520398.1|CO520398
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|71318422|gb|DR795977.1|DR795977
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|148947538|gb|EC893010.2|EC893010
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
EST: gi|91873363|gb|EB403320.1|EB403320
EST:     TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGC                         GGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG
genomic: TGCACCCTTCCCCCACCTTCCTTGCCTCCGGCCCTCGCTACCGCCGCCGCgtgagtgctc ... tcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acataattttgttctcaaaactaagtttgcttactctggcgatgatcatttgcagGGACATCCATCTTCGAAGGTCAGCTTCCGAAGGTTGGCGCCACGATTAAAGGTCAATGCACTTTTTGGATGGCCTAGGGGGGACACGACAGCACGTGAAC
                           tgcttac  putative branch site (score: 2)
     attttgtt  TA-rich tract