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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttgtattctgtacatactgtcactgatttctatattagtttatgtaaatctcataactaggttaatccatcagttgcatctctttcttattgacagATCATTGGAATTGTTGTTGCTGATACTCATGATAATGCAAAAACTGCTGCCAACAAAGTACATATCGAGTATTGTGAGCTCCCAGCAATTTTATCTATAG

Basic information

species Zea mays
transcript GRMZM2G158087_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213187472|gb|FM191316.1|FM191316
EST:     CCATGATGAGGAG-TTTTTTGCATCTAACATTGTTACTTGTGTTGGTCAG                         ATCATTGGAATTGTTGTTGCTGATACTCATGATAATGCAAAAACTGCTGCC
genomic: CCATGATGAGGAGTTTTTTTGCATCTAACATTGTTACTTGTGTTGGTCAGgtatcttgta ... ttattgacagATCATTGGAATTGTTGTTGCTGATACTCATGATAATGCAAAAACTGCTGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtaaatctcataactaggttaatccatcagttgcatctctttcttattgacagATCATTGGAATTGTTGTTGCTGATACTCATGATAATGCAAAAACTGCTGCCAACAAAGTACATATCGAGTATTGTGAGCTCCCAGCAATTTTATCTATAG
                                ttgcatctctttctt  CT-rich tract
                                         tttcttatt  TA-rich tract