1 5' 3' | 2 5' 3' | 3 5' 3' |
gtagactcacatctggcctagcctatcacatttgcaacttcgacacataacctgttgcttatatctgttacgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATGCAGAATTGCAGAAGAAGCAG
species | Zea mays |
transcript | GRMZM2G157722_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGTTTATGCCCTGTCCAAATCAACGGATATTTGATTAGGTAGTAAG GCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
genomic: GCCTTGTCTATGCCCTGTCCAAATCAACGGATATTTGATTAGGTAGTAAGgtagactcac ... acgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAAT
atcacatttgcaacttcgacacataacctgttgcttatatctgttacgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATGCAGAATTGCAGAAGAAGCAG
acataac putative branch site (score: 6)
ttatatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagactcacatctggcctagcctatcacatttgcaacttcgacacataacctgttgcttatatctgttacgaatgtagGCTTATACAATGGAGTTGGAAGCCGAAGTTCAGAAACTGAAGGAACAAAATGCAGAATTGCAGAAGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC